Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1328 ATGGCCGAAACAGTTGAAAATACAACGAAAGAAACTGTTCAAGAATATGAAGATGTGGAGGACCAAATGTTTGAAGAGCTTGGATTGGACGCTCGTCTAATTCGTGCCTTACTCAAAAAGGGAATTGAGAAACCCACTCCAATTCAGCGGGTTGCAATTCCACTCATATTGGAAGGTAAGGATGTGGTTGCTCGAGCAAAGACGGGTTCTGGCAAGACATTGGCATTCCTTCTTCCGTTGCTTCAAAAATTGTTTACTAATAATGTTCAAAGAAAGAAGCTAGCACCCAATGCATTCATTTTGGTGCCAACTCGAGAACTGTGTCAACAGGTATATGCAGAGGTCTCATCTCTTATAGAATTATGCAGAGTTCAACTGAAAGTTGTGCAATTGACCAGCAATATGCGACCTTCTGACCTGCGGACAGCACTGAGTGGGCCCCCTGATGTTTTGATTTCTACACCTGCTTGTGTAGCAAAGTGCTTGTCTACTGGCATACTTCAAGTAGCCTCCATTAGTGGTTCTCTTGAAACTTTGGTTCTTGATGAGGCAGATCTTCTGTTATCATACGGTTATGAAAATGATATTAAAGCTTTTACAGCTCACATTCCCAGAAGTTGCCAGTGCCTTCTCATGTCGGCAACATCAAGTGCTGATGTGGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACATTGCCTGAAGTAGGAAATCAGAAGGATGAGATCATCCCTAAAAATGTTCAACAGTTTTGGATCTCATGCCCTGCCAGTGATAAGTTGCTTTACATTCTTGCCCTGTTGAAATTGGAGTTGGTCCAAAAGAAAGTTCTGATATTCACCAACAACATAGACATGAGTTTCAGATTAAAACTTTTCCTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTCGATTATCTGATTGCAACAGACGACAGCCACACAAAGGAGAAGGATGAAGCAATTAAGGAAAGTAATGGTGAATTGCGGAAGTCCAAAAATCATGTTAAGCGAAAATTAGATTCTGAATTTGGAGTAGTGAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGGTATGTTCATCGAATAGGACGAACTGGAAGAGCATATAATTCTGGTTGTTCTGTCTCTCTGGTTTCTACTGATGAGATGGGAACTTTAAATGACATAAGATCCTTTGTTGGGGATGTTGAAAACAATGGCTCAAACTCAATTGCTGAATTTCCCTTGCTCACGAAAAATGCAGTGGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACGAAAATTGCTGTTCGTGAATCACGAGCTGCAGATTTGAGGAACGAAATTCTGAACTCTGAAAAGTTGAAGGCCCACTTTGAATCTAATCCAAGGGACCTAGATCTACTGAAGCATGACAAAGTTCTGAGCAAAAATGCCCCTCCTCCGCACCTACGTGACGTGCCTGACTACCTGGTAGACAAAACAACGACAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAGTAATCGCTTCCGTAGATCCAAGAAAAAGTCCAGGAAAGGTGGAGACCCCTTGAAGGCTATATCTTCTAAGGTATCGAAAAGATCACGCAAAGGTGATGGAGATAAACGCAAGAGGAAAAAGGAAGTTTGA 1767 0.4148 MAETVENTTKETVQEYEDVEDQMFEELGLDARLIRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAFLLPLLQKLFTNNVQRKKLAPNAFILVPTRELCQQVYAEVSSLIELCRVQLKVVQLTSNMRPSDLRTALSGPPDVLISTPACVAKCLSTGILQVASISGSLETLVLDEADLLLSYGYENDIKAFTAHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDEIIPKNVQQFWISCPASDKLLYILALLKLELVQKKVLIFTNNIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHTKEKDEAIKESNGELRKSKNHVKRKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGCSVSLVSTDEMGTLNDIRSFVGDVENNGSNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAADLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLVDKTTTEAREMVKLARDAMGNSNRFRRSKKKSRKGGDPLKAISSKVSKRSRKGDGDKRKRKKEV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1328 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 235 IPR027417 -
Bisa11g1328 588 Gene3D - 238 443 IPR027417 -
Bisa11g1328 588 SMART ultradead3 41 254 IPR014001 -
Bisa11g1328 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Bisa11g1328 588 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Bisa11g1328 588 PANTHER RNA HELICASE 8 550 - -
Bisa11g1328 588 MobiDBLite consensus disorder prediction 541 588 - -
Bisa11g1328 588 MobiDBLite consensus disorder prediction 571 588 - -
Bisa11g1328 588 CDD DEADc_DDX56 29 236 - -
Bisa11g1328 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Bisa11g1328 588 CDD SF2_C_DEAD 251 414 - -
Bisa11g1328 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Bisa11g1328 588 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Bisa11g1328 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Bisa11g1328 588 Coils Coil 2 22 - -
Bisa11g1328 588 SMART helicmild6 291 405 IPR001650 -
Bisa11g1328 588 Gene3D - 1 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1328 Bisa-ChrBisa11 32532025 32537166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1328 24 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.829 1.06e-36 139