Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1323 ATGGGAAGAGCTCCATGCTGTGATAAAGCTAACGTGAAGAAAGGACCATGGTCCCCTGAGGAAGACGCCAAACTCAAGGCTTATATTGAGCAGCACGGCACTGGCGGCAACTGGATAGCTCTGCCCCAGAAAATAGGTCTTAAGAGATGTGGGAAAAGCTGTCGTCTTCGATGGTTGAATTACCTTCGCCCCAACATCAAGCATGGGGGTTTCTCCGAAGAGGAAGACAACATAATTTGCAGCCTCTATTTAAGTATCGGAAGCAGGTGGTCAATAATAGCGGCACAATTACCAGGGAGAACAGATAATGATATAAAGAACTATTGGAACACGAGGCTGAAGAAGAAGTTGTTGGGGAAGCAGAGGAAAGAACAACAGGCCCAAGCTCGTGTGAAGCAAGACATAATGAAGATGAAGAGAGAGTCAGAGGCGGAAAATTTGGCCATACCTTTGAACCAAACACCCAATTGGGCAAGCCAACTTTCAGTGCCCACCCAACAGCCTTATAATTCCAACACCATCGATTCCCACTGCCCCTATCAAATTTTCTTCCCACTTTCACAACCACAAGACCCCCTATTTCCAACCTCAATAAATACCAATCTCATCAACTGTTCAAACATCACTAATACTAAGAGTTGTCAGTCAACAAACGCGTTTGAAGGCTTAAATGAATGGAGTGAGTTTGTGTGTGTTGATAACCCTCCTTCCCAACTTGTTGATGCTGCATTGCAGGGTAATTGCTTTGGTATGGGAAGCACAGGATCGGCTTCAACAGAGAGCTCTAGCTGGGGAGATATCACTTCTAACCTGCTTTACTCGTCTTTGCTTTCTGAATATGAAGGTTGCCAACAAGGACTAATGCCTCAGGAGGTTGCTTTCCATAACGAGTCTGGCTACTTTGGGATGCAATAG 915 0.4536 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYLSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARVKQDIMKMKRESEAENLAIPLNQTPNWASQLSVPTQQPYNSNTIDSHCPYQIFFPLSQPQDPLFPTSINTNLINCSNITNTKSCQSTNAFEGLNEWSEFVCVDNPPSQLVDAALQGNCFGMGSTGSASTESSSWGDITSNLLYSSLLSEYEGCQQGLMPQEVAFHNESGYFGMQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1323 304 CDD SANT 71 113 IPR001005 -
Bisa11g1323 304 Gene3D - 7 68 - -
Bisa11g1323 304 SMART sant 67 115 IPR001005 -
Bisa11g1323 304 SMART sant 13 64 IPR001005 -
Bisa11g1323 304 FunFam Transcription factor RAX3 70 144 - -
Bisa11g1323 304 FunFam Transcription factor RAX3 7 68 - -
Bisa11g1323 304 Gene3D - 70 145 - -
Bisa11g1323 304 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bisa11g1323 304 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bisa11g1323 304 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bisa11g1323 304 PANTHER OS09G0431300 PROTEIN 1 224 - -
Bisa11g1323 304 CDD SANT 16 62 IPR001005 -
Bisa11g1323 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bisa11g1323 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bisa11g1323 304 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bisa11g1323 304 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1323 Bisa-ChrBisa11 32487603 32488746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1323 1 140 MYB Transcription Factor Family AT5G65790 88.571 1.02e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa11g1323 Myb_DNA-binding 3.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1323 11 32487603 32488746 Bisa01g2139 01 38164850 38166073 CCT