LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g1321	ATGGGTCTTGGTGATGCCAGTAATAATAGCTCAGGCCTTCACCTTGTTCTAGGGTTAGGTTTGACGGTCGGTGCTGCTTCTTCCAAGGCTGATAATAATACTAGGGCAACCAAGAGCTCCTCCTTTAATTTCCCGCCAACCAGTAGTTGTGAGCCATCTCTGACGTTGGGTCTTTCCGGTGAGACTTTCCAAGTCCCAAAAAAGATTGATGCCATCAAAAGTTGCGAGGACACTCTTGACTTTTCGCGCCAAACATCACCTCACAGTCACAGCGCTGTTTCGTCCTTCTCCAGTGGGAGGGTGAAGAGGGAGAGAGATCTCAGCCCCGAAGAGGTTGAAGCAGCAGAGAGGGTTTCCTCCAGAGTAAGTGATGAAGACGAAGACGCCACCAATGCCAGAAAGAAACTCAGGCTCACCAAAGAACAATCTGCTTTGCTCGAGGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAGCAGAAGCAAGCTTTAGCCAGGGAGTTGAATCTACGGCCACGACAAGTTGAGGTGTGGTTCCAAAATCGGAGAGCCAGGACAAAGCTGAAGCAGACAGAGGTGGACTGCGAATTCTTGAAGAAATGCTGTGAGACGCTGACAGATGAAAACAGGAGGCTACAGAAGGAGGTGCAGGAGCTGAAAGCACTGAAGCTGGCCCAGCCTCTGTATATGGCTATGCCGGCGGCCACCCTGACGATGTGCCCGTCATGCGAGAGGCTGGGTGGGGTCACAAGCGATGGGGCTTCCAATAAGACTCCATTCACAATGGCTCCAAAGCCTTACCTCTACCGCCCCTTCCCCAATCCTTCTGCAGCATGCTGA	840	0.5143	MGLGDASNNSSGLHLVLGLGLTVGAASSKADNNTRATKSSSFNFPPTSSCEPSLTLGLSGETFQVPKKIDAIKSCEDTLDFSRQTSPHSHSAVSSFSSGRVKRERDLSPEEVEAAERVSSRVSDEDEDATNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQELKALKLAQPLYMAMPAATLTMCPSCERLGGVTSDGASNKTPFTMAPKPYLYRPFPNPSAAC	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g1321	279	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	18	257	-	-
	Bisa11g1321	279	MobiDBLite	consensus disorder prediction	99	136	-	-
	Bisa11g1321	279	MobiDBLite	consensus disorder prediction	27	57	-	-
	Bisa11g1321	279	SUPERFAMILY	Homeodomain-like	124	190	IPR009057	-
	Bisa11g1321	279	SMART	halz	189	232	IPR003106	GO:0006355\|GO:0043565
	Bisa11g1321	279	MobiDBLite	consensus disorder prediction	81	136	-	-
	Bisa11g1321	279	Coils	Coil	195	225	-	-
	Bisa11g1321	279	Gene3D	-	137	187	-	-
	Bisa11g1321	279	Pfam	Homeobox associated leucine zipper	189	223	IPR003106	GO:0006355\|GO:0043565
	Bisa11g1321	279	CDD	homeodomain	133	190	IPR001356	GO:0003677
	Bisa11g1321	279	SMART	HOX_1	131	193	IPR001356	GO:0003677
	Bisa11g1321	279	ProSitePatterns	'Homeobox' domain signature.	164	187	IPR017970	GO:0000981\|GO:0006355
	Bisa11g1321	279	Pfam	Homeodomain	133	187	IPR001356	GO:0003677
	Bisa11g1321	279	MobiDBLite	consensus disorder prediction	81	98	-	-
	Bisa11g1321	279	ProSiteProfiles	'Homeobox' domain profile.	129	189	IPR001356	GO:0003677
	Bisa11g1321	279	FunFam	Homeobox-leucine zipper protein 18	118	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g1321	Bisa-ChrBisa11	32436107	32437197	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g1321	1	279	Homeobox Transcription Factor Family	AT4G37790	59.322	8.67e-96	281

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Bisa11g1321		Homeodomain	2.2e-16	CL0123