Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1236 ATGTATTACGGCACGGCGGTGGCGGGGAGAACTCGGTCTAGAAAAGCCCTCAATCAGGAGCAAGACTTGGAGAAAAAGAATCAGAGTAAGAAGCGACATAAGGCAGGGGAAATTGTGTCTGATTATTCCAGCGAAGAAGGGCTTTCAGTGGATTCTGAATCTGATGATGATGTGTCCATCATAGGAGAACACGACGTTAACGGAGTTCCAGGGGATGATGTTCATGTGTTGGTTATAGATGAAAGTGACGATGATATCATTCCAATGAATGATGCTGTATTGCTCACAGGAGAACCGGCCGATGAGGGAAGTCCACCGGAGAAAGAAGTAGAAGATGTTGAAAGAAACAAGTCCAGTGCGGAAAGAAACCAGGCTGTGTTGCTCACAGGAGAACTGGCCGACGAGGGAAGTCCACTGGAGAAAGAAGTAGAAGATGTTGAAAGAAACGAGTCCAGTGCGGAAAGAAACCAGGCCGAGTTGGGGTTAGTGAGGAAGAAAGTGTCCTGTATGGATACTCCCATTGAGGAGAATGCCGTTCCAGGTCGTGGATGTGTAGCCCAGAGGACTCGTTCTCATTTTAGTTCAAAGCTTGGGAAGAGTAAATCTAAGCTGGGAACAATTAGTAATCCGCTCTGCGTCGATGAAGAAGAGCAGGAATCCGAGACTCTCTCTGAACAATCTGATGACTCTCTCTATGTTGAGGAAGAGGTGCCTTTGGAGAAGATGGCTTCTTCTAGTGATGAGGAAGGAAATCCAAAAGGTACCGAGACGGGTATACCATTGAAGTTTACTTTTGGGACAAAAGAGTCAGAAGCACCGGAGAAATCAGAGTTCGAGAAAGAATTGGATCAACTTTGGGCTGAGATGGATGAGTGTCAACGTGCTAGTGAAGAAGATTCTGGTCAGGTTGAAAATGATCGTGCTTATGACCCATGTTCAGATGATAAAGTTAGCAGAGCTACCCTTTGTCAACAAGGGAAACATGTTATTATTTATAATGAGGAAATTGGACTTACATGTAGATATTGCTCACATGTATCACTGGAGATCAAGTATTGTGACCCTCCATTTAGCAAAAATCCCTTTGGAAAATCAGGTAGGAAAGACTATTGCACTCTGGATAACACTGACCGCCCTCCCTCCGATGACCTTCAGCATCAAATCCTTGATTGCGATGATGATTCTTCAGGGCATGATTCCTATATTTCCACTGGAACTGTGTGGGATTTAATTCCAAGAGCGAAAACAAGTATGTTCCCTCATCAACGTGAGGCTTTTGAATTTCTTTGGATGAACTTAGCTGGTGGAATAGTTCGTGACAAGTTGAAAGGGCAGTTAGATTTTGCTGGTGGAAGTGGTTGCATCATATCACATGCTCCTGGCACTGGGAAAACCCGTCTTACCATTGTCTTTCTTCAGTCGTTCATGCAGTTATATCCTAATTGCAGACCAATGATCATAGCTCCAAAAAGCATGCTTCTTACATGGGAAGAGGAGTTTGACAAGTGGGAGGTTGGTGTTCCTTTTCACAATTTGAGCAGTTCTGAGTACTCTGGGAAGGAGAGTGAGGAAGCTATGATCCTTTTGAGGCAACCTGGTCGTCATGTACACAATTTAAACTCAGTCCGTGTAGTGAAGTTGTATTCCTGGAAAAAGGATAGAAGCATCTTGGGAATTAGTTACGACTTGTTTAAGCTGCTTTCTCAAAAGAAATCTGTTGACACGGTTATAAAGAAAGCCCTTCTTGAGCTTCCTGGTTTATTAGTTCTTGATGAGGGTCACACCCCTCGCAATGCAAATAGTCTTATATGGGAAGCTTTGTCAGAAATCAAGACAAAGAGACGCATCATACTCTCTGGAACTCCCTTTCAGAATAATTTCATTGAGCTTAATAATACCATCCGCTTGGCGAAGCCAAAGATTGCCAAATGGAACGCTGCTGGAGACAGAGTGAAACCATTCGATGAGAAGCAAGGGTGCAGAAGGAATGAAAACAGAGATAAATTGGGAGATCTATTCTATTTATATCACAAAGTGAAGACTGTTAGGGAAAAAGATAAGATAGTTGATGAGATCAGAGACATGATTAAACCATTCGTGCATGTGCACAAGGGTACCATACTGCAAGAGAGTCTTCCTGGGTTGAGGGAGTTAGTAGTTAGGTTAAAGCCAACCGAGTTGCAGAAGGATCTTCTTGAACATATTCAGATGATGAGGAAAACGAAAGGCAGCCTTCAGAGCAAAGAGGGATCCCTTGAATTAGATCACTGGGAGTCTTTAACTACTGTGCATCCTTCACTATTTCCTGTACTTGAAGACAAGAGGTTAGAAAGCGTAGAATGGTATCCTGAGGATGGAGTCAAAACGAAATTTCTAATGGAACTCATTCGGCTTAGCAAGCTTATGAATGAAAAAGTTTTGGTTTTTAGTCAGTTTATTAAGCCCTTGGTCTTTCTAACAGACCAGCTTAAATCTCATTTTAGTTGGAAAGAAGGAAGAGAGATGTTAGTAATGCACGGAAAATTAGATGCAGGGACTCGTCAAGATTTAATTAAAGCCTTCAATGATCCCAGAAGCAAAGCAAGGGTATTGCTAGCATCAACCAGGGCTTGTTATGAAGGGATCAATCTGGTTGGTGCTTCAAGGGTCGTTTTGCTTGACGTTGTATGGAATCCTTCAGTGGATAGGCAGGCAGTGAGTCGTGCTTATCGTCTTGGACAGAAGAAAGTTGTCTACACTTACCGTCTCATAACCTCAGGGTCAAGGGATGAACAAAAATGCCGTAGTCAGGCTGAGAAGGATCAGTTGTCTGAGATGGTGTTCTTCTGTCCCAATGGAGTTGGCCAGCAGCGGAAGATCGCATCTGCAGACTTGGAAGACAAAGTGTTGGAAAAGATGTCCGAGCCAGAATGCTTACGCTGTTCAAAGAGATGGTGGATAATGCCATCAAACAGAAAGTGGCTTGTTCCTCTTCCCCTAATTTCCCTTTCGTCTATCGTCTTTGTTTCTTCAAAACTGAGGACATGTACTCAAACAGAACCTTCTGGGATTGTCCGTGTGACCTGA 3066 0.4335 MYYGTAVAGRTRSRKALNQEQDLEKKNQSKKRHKAGEIVSDYSSEEGLSVDSESDDDVSIIGEHDVNGVPGDDVHVLVIDESDDDIIPMNDAVLLTGEPADEGSPPEKEVEDVERNKSSAERNQAVLLTGELADEGSPLEKEVEDVERNESSAERNQAELGLVRKKVSCMDTPIEENAVPGRGCVAQRTRSHFSSKLGKSKSKLGTISNPLCVDEEEQESETLSEQSDDSLYVEEEVPLEKMASSSDEEGNPKGTETGIPLKFTFGTKESEAPEKSEFEKELDQLWAEMDECQRASEEDSGQVENDRAYDPCSDDKVSRATLCQQGKHVIIYNEEIGLTCRYCSHVSLEIKYCDPPFSKNPFGKSGRKDYCTLDNTDRPPSDDLQHQILDCDDDSSGHDSYISTGTVWDLIPRAKTSMFPHQREAFEFLWMNLAGGIVRDKLKGQLDFAGGSGCIISHAPGTGKTRLTIVFLQSFMQLYPNCRPMIIAPKSMLLTWEEEFDKWEVGVPFHNLSSSEYSGKESEEAMILLRQPGRHVHNLNSVRVVKLYSWKKDRSILGISYDLFKLLSQKKSVDTVIKKALLELPGLLVLDEGHTPRNANSLIWEALSEIKTKRRIILSGTPFQNNFIELNNTIRLAKPKIAKWNAAGDRVKPFDEKQGCRRNENRDKLGDLFYLYHKVKTVREKDKIVDEIRDMIKPFVHVHKGTILQESLPGLRELVVRLKPTELQKDLLEHIQMMRKTKGSLQSKEGSLELDHWESLTTVHPSLFPVLEDKRLESVEWYPEDGVKTKFLMELIRLSKLMNEKVLVFSQFIKPLVFLTDQLKSHFSWKEGREMLVMHGKLDAGTRQDLIKAFNDPRSKARVLLASTRACYEGINLVGASRVVLLDVVWNPSVDRQAVSRAYRLGQKKVVYTYRLITSGSRDEQKCRSQAEKDQLSEMVFFCPNGVGQQRKIASADLEDKVLEKMSEPECLRCSKRWWIMPSNRKWLVPLPLISLSSIVFVSSKLRTCTQTEPSGIVRVT 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 15 40 - -
Bisa11g1236 1021 Gene3D - 713 972 IPR027417 -
Bisa11g1236 1021 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 25 973 IPR044567 GO:0080188
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 214 233 - -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 102 119 - -
Bisa11g1236 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 794 959 IPR001650 -
Bisa11g1236 1021 SMART helicmild6 817 906 IPR001650 -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 1 73 - -
Bisa11g1236 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 700 IPR027417 -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 96 157 - -
Bisa11g1236 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 445 640 IPR014001 -
Bisa11g1236 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 941 IPR027417 -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 188 207 - -
Bisa11g1236 1021 Pfam SNF2-related domain 451 742 IPR000330 GO:0005524|GO:0140658
Bisa11g1236 1021 CDD SF2_C_SNF 788 917 - -
Bisa11g1236 1021 Gene3D - 398 673 IPR038718 -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 292 311 - -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 135 154 - -
Bisa11g1236 1021 SMART ultradead3 414 657 IPR014001 -
Bisa11g1236 1021 Pfam Helicase conserved C-terminal domain 790 906 IPR001650 -
Bisa11g1236 1021 MobiDBLite consensus disorder prediction 175 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1236 Bisa-ChrBisa11 31033299 31040450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1236 803 941 RAD5 or RAD16-like Gene Family AT5G05130 39.286 2.98e-18 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa11g1236 SNF2_N 6.1e-22 CL0023