Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1215 ATGCCGTTCCATCTTCAGCAATCCGCATCCACGACGCTGTCTCACTACGCCGCACCATACGTGGCGGCGCCACCGGCAGGGCAAATTCCTGCTCAAGCGCCTCAGGCCGCGGTGCCCGGCGTTTACTCCTACCCGCAGTACCAGCAGGCGCAGCAGTTATTTCAACGCGATGCACAGACGATCACACCCGAGGCTCTGGAGAATGTGAAAGCGGCCATTGCTAACAGCGAGATCGAGCACAAAGCGGAGACCAAGAAGAAAGCGATTCCCCGCAAGGCTGCCGGGCAATCGTGGGAGGATCCTTCGCTGGCGGAGTGGCCGGAGAATGATCATCGGCTGTTTTGTGGTGATCTTGGTAATGAGGTCAATGACGACGTTCTTTCGAAAGCCTTTTCGCGATTTCCTTCGTTTAACATGGCGAGAGTTGTAAGGGATAAGCGGAGTGGAAAAACCAAAGGTTATGGATTTGTTAGCTTCGCGGATCCCTCTGATCTGGCCGTTGTTCTGAAAGAGATGAATGGTAAATATGTCGGAAATAGGCCAATCAAACTGTGCAAGAGTAAGTGGAAGGAGAGAACTGATTATGATGCTATGGAGAAACACAAGAAACAGTCTCGGAAGAAACCGAAACCTTCGAGGGTGGGTGTATTACATTACTGA 660 0.5197 MPFHLQQSASTTLSHYAAPYVAAPPAGQIPAQAPQAAVPGVYSYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKAIPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVVLKEMNGKYVGNRPIKLCKSKWKERTDYDAMEKHKKQSRKKPKPSRVGVLHY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1215 219 MobiDBLite consensus disorder prediction 194 219 - -
Bisa11g1215 219 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 199 - -
Bisa11g1215 219 SUPERFAMILY RNA-binding domain, RBD 94 191 IPR035979 GO:0003676
Bisa11g1215 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Bisa11g1215 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Bisa11g1215 219 FunFam RNA-binding protein 42 46 196 - -
Bisa11g1215 219 Coils Coil 66 86 - -
Bisa11g1215 219 Gene3D - 46 185 IPR012677 -
Bisa11g1215 219 MobiDBLite consensus disorder prediction 203 219 - -
Bisa11g1215 219 MobiDBLite consensus disorder prediction 84 104 - -
Bisa11g1215 219 CDD RRM_RBM42 105 187 IPR034215 -
Bisa11g1215 219 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1215 Bisa-ChrBisa11 30707840 30708499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1215 113 205 Eukaryotic Initiation Factors Gene Family AT2G23350 26.882 1.84e-06 46.2