Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1202 ATGGGCAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTGTGCAACGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGGCAGAAGCTGATGATTATGAGGATCAAAAAGTTTCAAGGGTAAAGAACATATCACTAAATAAGAACAAAGAAGCCAAACTGTCCAAACGAAAGCACAACCAAGATAATGTATTATCTGGAGTGTTTGCCCCTGATTATAACCAGGGGTTCCGAAAAGTTGTAGATGAAGATACAAGCAATAGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGTACTGATGCTAGTGATTTGACAGGTCCTGCTCAATCAATTGTATGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTGTGGGTCGTCCAAAACAATCTTCTGTTGAGAAGCTCACTAAAGATCTATACACTATTCTTCATGAACAACAATCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTGTCTGTTGAGATTGGACATGGAAGCGTCCTTATTAGGCATCCGAGCTCTTTAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTATCAGTTGATAATAAACAATGCCCTACTAGTGAGGCATATTCATGTTCTGGAGCCACTCCTCTGCATAATGATTATAGTGGTGTGAACTTTTCTTCTCAGGTAGTTCAAAAGATCAGGAACTCTGGCCAAGGAATGCAGCAGGAACAACTTAAAAGGGACAAGACTCAGCATGAAAAGGTTCAAATCCTTGGATATCATAAATCACCGCTTTGCTTGGTAGATTTAAATGACGTCATCAACTACGATGAATTTATAAAAAGCTTGACTAATGAAGAGCAGCAACAATTACTAAAGTGTCTCCCTTTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAAGCATGTTCAGTAGCCCTCAATTCAAGGAGAACCTAACTTATTTTCAGCAGCTTCTTGGGGAAGGTGTCTTTGATATCTCCTTGTCAGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTTCATTATCCAATCTGTCAAAATCAAAATGGGTGGAACACTATAATTTACTTAAGAGATTGAAAAACAGAGCTGGAAAATCTGTTGCTCTGGTATCTACTGGCAATGCATCTAGTAATATGATAAATGTCAAGAGATATCATGACAGCAAAAATCAAAACTTTTCAGAATTGAAGACGACAACAATGAGGAGCCCTAAAAGGGTGACGGTGAAGGTTGGCTGTGAGGGCAAGGATGCTGAAGAATACGGTTCTTGCTTCAGTCCAAAAAGCCTATTTGCTTTGCCTCCTGATGGCGACTCGCTCATGCTAGACTCTTTCAATTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCCATCTAACAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCAACATTAAGCTATGGTGCTCAAGCCAGCACTAGTAGTAGCCCAATATATCCCCATCTTCTCCATCCTTAA 1623 0.4165 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEADDYEDQKVSRVKNISLNKNKEAKLSKRKHNQDNVLSGVFAPDYNQGFRKVVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSIVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSLAREEESEASSLSVDNKQCPTSEAYSCSGATPLHNDYSGVNFSSQVVQKIRNSGQGMQQEQLKRDKTQHEKVQILGYHKSPLCLVDLNDVINYDEFIKSLTNEEQQQLLKCLPLVDTAKLPDSLKSMFSSPQFKENLTYFQQLLGEGVFDISLSGAKPEDCKTLKRLSLSNLSKSKWVEHYNLLKRLKNRAGKSVALVSTGNASSNMINVKRYHDSKNQNFSELKTTTMRSPKRVTVKVGCEGKDAEEYGSCFSPKSLFALPPDGDSLMLDSFNFVDESSDQDLLLEVPSNSSFPQAELLHPTLSYGAQASTSSSPIYPHLLHP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1202 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Bisa11g1202 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bisa11g1202 540 Gene3D - 293 385 IPR038108 -
Bisa11g1202 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Bisa11g1202 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bisa11g1202 540 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Bisa11g1202 540 Gene3D - 3 88 IPR013088 GO:0006355|GO:0008270
Bisa11g1202 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 532 IPR044589 -
Bisa11g1202 540 FunFam GATA transcription factor 27 3 85 - -
Bisa11g1202 540 Pfam Asx homology domain 280 366 IPR028020 -
Bisa11g1202 540 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Bisa11g1202 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1202 Bisa-ChrBisa11 30489791 30496007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1202 1 517 C2C2-Gata Transcription Factor Family AT4G17570 54.667 2.75e-168 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa11g1202 ASXH 1.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1202 11 30489791 30496007 Bisa01g1039 01 17527256 17532774 CCT