Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1169 ATGGGGGAAAAGGAGGATTTGGGTTTGAGTCTCAGTTTAAGCTTTCCTCACAACAATCCTAATCCTCTCCAGCTCAATCTCATGCCCTCTTCTGCTTCTAATTCTCACAAACCCTCTTGGAACGAACCTTTTACTCTCTCAGATCGAGATTCTGAAACATGCAGAGGAGAAAATCGGTCTTTCCTGCGAGGGATCGACGTGAATCGATTACCTTCTGGGGTTGATTGCGAAGACGAGGCAGGCGTTTCGTCTCCGAACAGCACGATCTCGAGCGTGAGCGGCAAGAGAAGCGAGAGGGACCCCAACGGAGAAGAACATGACATGGACAGAGATTGCTCTCGAGGAATCAGTGATGAAGAAGACGGTGAAACCTCCAGGAAAAAGCTTCGGCTTTCCAAGGATCAATCTGCTATACTCGAGGAAAGCTTCAAAGAACACAATACTCTCAACCCTAAGCAAAAGTTGGCTCTTGCCAAGCAGCTTGGCCTTCGACCCAGACAGGTTGAGGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGCTGAAGCAAACTGAGGTGGACTGTGAGTTTTTGAAGAGATGCTGCGAGAATCTGACGGAGGAGAACAGGCGGTTACAGAAGGAAGTTCAGGAGCTGAGAGCACTGAAACTTTCCCCACAACTGTACATGCAGATGACCCCACCGACTACTCTCACCATGTGCCCATCGTGTGAGCGGGTGGCTGTGCCGCCGTACGCGGCGACTGTGGGCGGCAACCGCCACCATCCGATGGCCCAAGCCCACCCTCGCCCCATCCCCGTTGGCCCATGGGCCCCCGCGGCAGCCCCAATCACTCACCGGCCGTTCGATGCCCTCCATCCCAGATCGTGA 870 0.5333 MGEKEDLGLSLSLSFPHNNPNPLQLNLMPSSASNSHKPSWNEPFTLSDRDSETCRGENRSFLRGIDVNRLPSGVDCEDEAGVSSPNSTISSVSGKRSERDPNGEEHDMDRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAATVGGNRHHPMAQAHPRPIPVGPWAPAAAPITHRPFDALHPRS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1169 289 PRINTS Lambda-repressor HTH signature 153 162 IPR000047 GO:0003677
Bisa11g1169 289 PRINTS Lambda-repressor HTH signature 162 178 IPR000047 GO:0003677
Bisa11g1169 289 CDD homeodomain 126 183 IPR001356 GO:0003677
Bisa11g1169 289 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634
Bisa11g1169 289 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Bisa11g1169 289 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Bisa11g1169 289 SMART HOX_1 124 186 IPR001356 GO:0003677
Bisa11g1169 289 MobiDBLite consensus disorder prediction 12 47 - -
Bisa11g1169 289 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Bisa11g1169 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 245 - -
Bisa11g1169 289 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
Bisa11g1169 289 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Bisa11g1169 289 MobiDBLite consensus disorder prediction 81 96 - -
Bisa11g1169 289 CDD bZIP 175 214 - -
Bisa11g1169 289 SUPERFAMILY Homeodomain-like 112 183 IPR009057 -
Bisa11g1169 289 MobiDBLite consensus disorder prediction 97 131 - -
Bisa11g1169 289 Gene3D - 130 180 - -
Bisa11g1169 289 FunFam Homeobox-leucine zipper protein 18 111 187 - -
Bisa11g1169 289 Coils Coil 181 218 - -
Bisa11g1169 289 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1169 Bisa-ChrBisa11 29965781 29967169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1169 1 289 Homeobox Transcription Factor Family AT4G16780 64.865 3.36e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa11g1169 HD-ZIP_N 6.1e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1169 11 29965781 29967169 Bisa01g1073 01 17960633 17962044 CCT