Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1129 ATGGAGAGGCACAAATGCAAGCTCTGCTCCAGAACGTTTGCCAATGGCAGAGCATTGGGTGGTCACATGAAGGCTCACTTGGCCTCTCTTCCTCTTCCTCCCAGGCCCCAACCACTCCCTCACTCTGCAACTTCCTTCTCCTACTCCTCTTCTTCCGACGAAGAAGAACCTCAGGAACCACTTTTATACACAGAATCAGAGGAAAAGGCCTTGGGTTATGGCTTGAGGGAGAATCCCAGGAGGAGTTTCAGGCTCGCAGATCCTGAGTTTTCCTTCGCGGTCGACACTGTGTCCGTCGTCCAAGACAGGGAGAGCGAGACCGAGTCAAAGAATCCAACTCGCCGGCGATCCAAGCGAACCCGAAAATCCGGCGTCGGAGCAACCCAGGAATTGGAAGTGAAGAAGCCTAGGCCGAGTTTCACGGAGCCGCCGCCGACAGAGCCGGAACAGGTGAGCTCGGTTTCTGATGCTTCGACCGATGAAGATGTTGCCATGTGCCTCATGATGTTGTCGAGGGACAGATGGATGAAAAAAGTTGTGGAAGAAGATCAAGTGGAGAGATCAAAGGGATTGGAAGAGATCAAGTTGAAGAAGAAGCATCAGTCTGATAACATCAAGAAAACGTTTCGATCTTCCCGAGCATTGGCCAGTCACAATAATAACTGGTTTTCCGATGAAGCAGAAGCGAAAATTGCAGGTAATGATAAAATTTTCGAATGTCCATTTTGTTACAAGGTGTTTGGGTCGGGACAAGCACTTGGCGGCCATAAGAGATCTCACCTCTTACCATCTTCGTCGACAACAATTATCCACTCTGCTAAATGTTTCATAGATCTCAACTTGCCAGCTCCAGCAGAAGAAGACGAACTCAGTGTGGTTTCTGATGCGTAA 891 0.4938 MERHKCKLCSRTFANGRALGGHMKAHLASLPLPPRPQPLPHSATSFSYSSSSDEEEPQEPLLYTESEEKALGYGLRENPRRSFRLADPEFSFAVDTVSVVQDRESETESKNPTRRRSKRTRKSGVGATQELEVKKPRPSFTEPPPTEPEQVSSVSDASTDEDVAMCLMMLSRDRWMKKVVEEDQVERSKGLEEIKLKKKHQSDNIKKTFRSSRALASHNNNWFSDEAEAKIAGNDKIFECPFCYKVFGSGQALGGHKRSHLLPSSSTTIIHSAKCFIDLNLPAPAEEDELSVVSDA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1129 296 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 296 IPR044303 GO:0006355
Bisa11g1129 296 SMART c2h2final6 238 260 IPR013087 -
Bisa11g1129 296 SMART c2h2final6 4 26 IPR013087 -
Bisa11g1129 296 MobiDBLite consensus disorder prediction 41 57 - -
Bisa11g1129 296 Gene3D Classic Zinc Finger 174 261 - -
Bisa11g1129 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Bisa11g1129 296 Pfam C2H2-type zinc finger 238 260 - -
Bisa11g1129 296 Pfam C2H2-type zinc finger 3 28 - -
Bisa11g1129 296 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Bisa11g1129 296 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Bisa11g1129 296 MobiDBLite consensus disorder prediction 27 70 - -
Bisa11g1129 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 260 IPR013087 -
Bisa11g1129 296 MobiDBLite consensus disorder prediction 99 158 - -
Bisa11g1129 296 SUPERFAMILY beta-beta-alpha zinc fingers 3 260 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1129 Bisa-ChrBisa11 29310248 29311138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1129 2 291 C2H2 Transcription Factor Family AT1G02030 39.062 1.82e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa11g1129 zf-C2H2_6 1.7e-07 CL0361