Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1054 ATGAGAAGGCATCGTCAATTTCATCTCCCGCATGCTCTCTTGTGCTCTCTTCTGTGTCTTCTTTCATCAACCTCAGTCTCACCAGAAACCGAAAAGGAGATTTTGCTCCAATTCAAGGGTAACATTACAGACGATCCTCGAAACAGCTTGAGTTCATGGGCTTTAAGTGGAAACCCCTGTGAAGATTACAGGGGAGTTTACTGTAACCCCGAAAGGTTCGTGGAAAGAATCATACTTTGGAACACTAGTCTGGCCGGAGAGTTGTCGCCGGCTCTGTCGGGATTGAAATTCTTGAGGAGTCTGACACTGTTCGGGAATCGTTTTTCTGGGAACATTCCAGAAGAATACGCTGACATTCACTCGTTGTGGAAGATCAATTTGAGCACCAATGCGTTATCTGGTTCAATCCCTGAGTTCATTGGTGATTTACAAAGCATCCGCTTTCTGGATTTGTCAAAGAATGGCTTCACTGGGGAGATACCATCGGGTTTGTTTAGGTACTGTTACAAAACCAAGTTCGTTTCTTTGTCTCATAACAAGCTTTCTGGTTCAATTCCTGCGTCATTGGTGAACTGCTCCAACCTTGAAGGGTTTGATTTCTCTTTCAACAATCTAAGTGGGGGTATTCCTTTGGGACTGTGTGATATTCCGAGGTTGTCTTATATGTCATTGAGAAGCAATGCCTTATCAGGGAGAGTGCGAGAGCAGATTCTGACATGCCGAAGTTTGACACTTTTAGATCTTGGTACTAACACATTCACTGGTTTAGCCCCTTTTAGCATTCTTGAAATGAAAAATCTCACTTATTTCAATGTATCTTATAATGGACTTAGTGGACAAATTCCTGAGATGAATTCCTGTAGTGAGAGTTTGGAAGTTTTTGATGCTTCAGGGAATGATTTGGATGGTGAGATTCCCTCAAGCATTACAAGATGCAAGAACCTCAAGCTATTGGACCTGGAGTTCAATAGGCTGAAGGGGATTATCCCAGTAGGAATTTCAGATTTGAGAAGGCTATTAGTTATTAAATTAGGTGATAATTCAATAAGTGGAACAATTCCAAAGGGGTTTGGCAACATAGAGCTGCTTGAAGTTCTGGATTTGCAGAATCTAAGCCTCGTTGGTGAAATTCCCGAAGATATAAGCAATTGCAAATTCCTTCTTGAGCTGGATGTTTCTGCTAATAACTTAGAAGGAGAGATTCCTCAGAACCTTTACAACTTAACAAACCTGAAATCTTTTGATCTGCATCAAAATCAGCTCAACGGAACCATCCCATCAAACCTAGGAAACTTGTCAAGGCTTCAATACCTAGATTTGTCACATAACTTGCTTTCTGGTTCAATCCCTTCTTCCCTTGGGAATTTGAAAAACTTGACCCATTTTAATCTCTCATCTAATAATCTCTCTGGTGTCATTCCACCTATTGCAACCCTACAACGTTTTGGTCCATCTGCATTTTCCAACAATCCTTTTCTTTGTGGTGCTCCATTGGGTACCCTTTGCACCAGAAATGGTACTACACCACCGTCAGCTTCTAGGAAGCCTAAAGTGCTTAGTGTCTCTACAATTGTAGCAATTGTTGCTGCAGCAGTAATTCTTGCTGGGGTTTGTGTAGTGAGCATCATGAATTTCAAGGCTCGTAGTCAAAAGAAAGATGAGCAGATGATGATTGTTGAGAGCACACCTCTTGGATCTACAGAGTCAAATGTCATAATAGGAAAGCTGGTTCTCTTCAGCAAAAGCTTACCATCAAAGTATGAAGACTGGGAGGCAGGAACCAAAGCATTGCTCAACAAAGAGTCTCTCATAGGCCGTGGAACAATCGGTACAGTCTACAGAACTGATTTTGACGGTGGGATCTCAATTGCAGTGAAAAAGCTTGAGACACTGGGAAGAATCAGAAACCAGGATGAATTCGAACAGGAAATTGGGCGAATAAGCAACCTTCAACACCCAAATTTAGTTGCTTTTCAAGGTTACTATTGGTCCTCAACAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTGTATGATAATCTACATGGGTTTGGTTATCCTGGAACCAGCACTAGCAGTGGCAACAGGGAATTGAATTGGTCCAAAAGGTTTCAAATTGCAGTTGGAACCGCACAAGCCCTTGCATACCTTCACCACGACTGTCGTCCACCAATTCTTCATCTCAACATCAAGTCCTCCAACATACTCTTAGATGACAAGTATGAAGCCAAGTTATGTGATTATGGGTTGGGGAAGTTACTACCCATTTTGGAGAATCACGTTCTGACCAAATTCCACAATGCTGTTGGATACATTGCACCGGAGTTGGCTCAGAGCATGAGGCAGAGTGAGAAATGCGATGTGTATAGTTTTGGGGTGATTCTGTTGGAGCTGGTCACGGGGAGGAAGCCTGTGGAAAGTCCAACAGCAAACGAGGTTGTGATTTTGTGTGAATATGTGAGAGGGTTGTTGGAGACAGGCTCAGCTTCACAATGCTTTGATACGAGGTTGCTGGGTTATGCAGAGAATGAATTAATTCAGGTCATGAGATTGGGGCTTATTTGTACCTCAGAGGATCCTTCAAGGAGACCAAGTATGGCCGAGGTTGTTCAGGTTCTTGAGTCTATCAGAAATGGTCTGGAACAACATTAA 2661 0.4247 MRRHRQFHLPHALLCSLLCLLSSTSVSPETEKEILLQFKGNITDDPRNSLSSWALSGNPCEDYRGVYCNPERFVERIILWNTSLAGELSPALSGLKFLRSLTLFGNRFSGNIPEEYADIHSLWKINLSTNALSGSIPEFIGDLQSIRFLDLSKNGFTGEIPSGLFRYCYKTKFVSLSHNKLSGSIPASLVNCSNLEGFDFSFNNLSGGIPLGLCDIPRLSYMSLRSNALSGRVREQILTCRSLTLLDLGTNTFTGLAPFSILEMKNLTYFNVSYNGLSGQIPEMNSCSESLEVFDASGNDLDGEIPSSITRCKNLKLLDLEFNRLKGIIPVGISDLRRLLVIKLGDNSISGTIPKGFGNIELLEVLDLQNLSLVGEIPEDISNCKFLLELDVSANNLEGEIPQNLYNLTNLKSFDLHQNQLNGTIPSNLGNLSRLQYLDLSHNLLSGSIPSSLGNLKNLTHFNLSSNNLSGVIPPIATLQRFGPSAFSNNPFLCGAPLGTLCTRNGTTPPSASRKPKVLSVSTIVAIVAAAVILAGVCVVSIMNFKARSQKKDEQMMIVESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLNKESLIGRGTIGTVYRTDFDGGISIAVKKLETLGRIRNQDEFEQEIGRISNLQHPNLVAFQGYYWSSTMQLILSEFVPNGNLYDNLHGFGYPGTSTSSGNRELNWSKRFQIAVGTAQALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLCDYGLGKLLPILENHVLTKFHNAVGYIAPELAQSMRQSEKCDVYSFGVILLELVTGRKPVESPTANEVVILCEYVRGLLETGSASQCFDTRLLGYAENELIQVMRLGLICTSEDPSRRPSMAEVVQVLESIRNGLEQH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1054 886 Gene3D Ribonuclease Inhibitor 239 505 IPR032675 -
Bisa11g1054 886 Pfam Leucine rich repeat 409 469 IPR001611 GO:0005515
Bisa11g1054 886 Pfam Leucine rich repeat 314 370 IPR001611 GO:0005515
Bisa11g1054 886 Gene3D Ribonuclease Inhibitor 27 167 IPR032675 -
Bisa11g1054 886 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 28 167 - -
Bisa11g1054 886 Gene3D Ribonuclease Inhibitor 168 238 IPR032675 -
Bisa11g1054 886 SUPERFAMILY L domain-like 166 498 - -
Bisa11g1054 886 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 168 505 - -
Bisa11g1054 886 PANTHER OS05G0588300 PROTEIN 213 330 - -
Bisa11g1054 886 SMART LRR_sd22_2 408 431 - -
Bisa11g1054 886 SMART LRR_sd22_2 432 458 - -
Bisa11g1054 886 SMART LRR_sd22_2 312 333 - -
Bisa11g1054 886 Coils Coil 869 886 - -
Bisa11g1054 886 Gene3D Transferase(Phosphotransferase) domain 1 675 886 - -
Bisa11g1054 886 ProSiteProfiles Leucine-rich repeat profile. 458 480 IPR001611 GO:0005515
Bisa11g1054 886 SMART LRR_typ_2 336 359 IPR003591 -
Bisa11g1054 886 SMART LRR_typ_2 408 431 IPR003591 -
Bisa11g1054 886 SMART LRR_typ_2 432 455 IPR003591 -
Bisa11g1054 886 SMART LRR_typ_2 143 167 IPR003591 -
Bisa11g1054 886 SMART LRR_typ_2 456 480 IPR003591 -
Bisa11g1054 886 Pfam Protein kinase domain 600 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g1054 886 FunFam Putative LRR receptor-like serine/threonine-protein kinase 575 674 - -
Bisa11g1054 886 ProSiteProfiles Leucine-rich repeat profile. 434 457 IPR001611 GO:0005515
Bisa11g1054 886 SUPERFAMILY L domain-like 73 210 - -
Bisa11g1054 886 ProSiteProfiles Protein kinase domain profile. 598 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g1054 886 CDD STKc_IRAK 604 879 - -
Bisa11g1054 886 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Bisa11g1054 886 Gene3D Phosphorylase Kinase; domain 1 568 674 - -
Bisa11g1054 886 SUPERFAMILY Protein kinase-like (PK-like) 599 877 IPR011009 -
Bisa11g1054 886 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1054 Bisa-ChrBisa11 27997022 27999772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1054 30 884 Receptor kinase-like Gene Family AT1G62950 65.593 0.0 1106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Bisa11g1054 Pkinase 4.7e-37 CL0016