Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1026 ATGCAATCAGAGCCAAGCTTGGGAATGATGGGAGGTGGTTTAAGCGGAGATTTAACTTCGGGGGACCACCACCGGCAACTGAAGGCGGAGATAGCGACTCACCCGCTCTACGATCAGCTTCTCGCCGCCCACGTTGCTTGCCTCCGCGTCGCCACTCCCATCGATCAGCTCCCTCTCATCGACGCCCAGTTATCTCAGTCCCATCACATCCTTCGCTCATACGCCTCCCACCATACCCATTCCCTCTCACCTCATGAGCGTCAAGACCTAGACAACTTCCTGGCACAGTATTTGATTGTGCTGTGTACTTTCAAGGAACAGCTTCAGCAACATGTCAAAGTACACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATTGAAAATACCTTGCAAGCCCTCACTGGTGTAAGTTTGGGTGAAGGAAGTGGTGCAACAATGTCCGATGATGAAGATGATTTGTTAATGGATTTCTCTTTAGACCAATCTGGCGCTGAAGGTCACGACATGATGGGATTTGGTCTCCCTACCGAATCTGAAAGGTCGCTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTGAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGTTGAAGAACTGGTGGCAGCAACACTCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGCTGCAGCTGAAGCAGATAAATAACTGGTTCATTAACCAAAGGAAACGCAATTGGCACAGCAGCTCTCAATCAGTCACCTCTTTAAAGTCGAAGCGCAAGAGATAG 861 0.4913 MQSEPSLGMMGGGLSGDLTSGDHHRQLKAEIATHPLYDQLLAAHVACLRVATPIDQLPLIDAQLSQSHHILRSYASHHTHSLSPHERQDLDNFLAQYLIVLCTFKEQLQQHVKVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDLLMDFSLDQSGAEGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSSSQSVTSLKSKRKR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1026 286 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Bisa11g1026 286 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Bisa11g1026 286 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Bisa11g1026 286 ProSiteProfiles 'Homeobox' domain profile. 209 272 IPR001356 GO:0003677
Bisa11g1026 286 FunFam homeobox protein knotted-1-like 3 isoform X1 210 271 - -
Bisa11g1026 286 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Bisa11g1026 286 CDD homeodomain 212 273 IPR001356 GO:0003677
Bisa11g1026 286 ProSiteProfiles ELK domain profile. 189 209 IPR005539 GO:0003677
Bisa11g1026 286 SMART HOX_1 211 276 IPR001356 GO:0003677
Bisa11g1026 286 SUPERFAMILY Homeodomain-like 211 275 IPR009057 -
Bisa11g1026 286 Pfam Homeobox KN domain 229 268 IPR008422 GO:0003677|GO:0006355
Bisa11g1026 286 Gene3D - 208 282 - -
Bisa11g1026 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1026 Bisa-ChrBisa11 27235875 27239060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1026 4 285 Homeobox Transcription Factor Family AT1G62990 78.621 6.02e-168 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa11g1026 KNOX2 2e-16 No_clan