Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1001 ATGGCAACGGCTAGGTCACCGAACCGTTCCTCCGAGGACATAGTCGATACGACGCCGTTGATGGTGAATTCAGGTGGGTCTTCCGATGAATTCAATTCTGGCCGTCGATTTGTTCGCAGGCAGAGCCTGCGCCGGGCTGCTCGGTTCCTGAGGCAGGCCAGTGGTCGTAGGATGATGCGCGAGCCATCGATGCTGGTCAGAGAGAGTGCGGCCGAGCAATTGGAAGAGAGACAGGGCGACTGGGCCTATTCTAAACCCGTTGTGATTCTTGATATTGTTTGGAACTTTATCTTTGTTGTCGTGGCCGCTACAGCTTTGGTTTTGAGTAGAAATGAATCTCCGAGCATGCCTTTGAGGTTGTGGATTGTGGGCTATGCTCTGCAATGCATCCTTCACGTCATCTGTGTTTGCGTTGAATATAGGAGGCGAAGGCGGTACCAGCGGGGCCAGTTTTCGCCAACCTTGAACACAGTGCACGGAAGGATTGGCAGCAGTGGGAATTTGAGTTCGGGTTCAAGGGACGGTTCTGCCCAGTACGTGTCATTGTCGCAATTCGACGAAGAGAGTACAAGTGTAGCAAAGCATTTGGAATCAGCAAATACAATGTTTTCATTTATCTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAAGCATTGGCCCATGATTCTCCTCAGCTTTACTGGCTATGTATAATTTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGCATAATTGGTATTGCAGTATGCTGTTGTCTTCCATGTATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGGGCATCGAAAGAAGACATTGAGCAATTGTCTAAGTTCAAATTCCGGAGAAATGATAATAACTTGAAACTTGCTGGTAATGCACAAGGACCTGTTTGTGGAATAATGACTGAATGCGGCAGTGATTTGCCAATTGAGCACAGTCTTTCCGAGGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGATGGGGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAGTGGCTGTATATTAATGCCACTTGTCCCCTCTGCAAGTTCAACATCTTGAAGAGTATTAACCAGAGTCAAGAGGAAGTATAG 1164 0.4725 MATARSPNRSSEDIVDTTPLMVNSGGSSDEFNSGRRFVRRQSLRRAARFLRQASGRRMMREPSMLVRESAAEQLEERQGDWAYSKPVVILDIVWNFIFVVVAATALVLSRNESPSMPLRLWIVGYALQCILHVICVCVEYRRRRRYQRGQFSPTLNTVHGRIGSSGNLSSGSRDGSAQYVSLSQFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAHDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRNDNNLKLAGNAQGPVCGIMTECGSDLPIEHSLSEEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKFNILKSINQSQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1001 387 SUPERFAMILY RING/U-box 324 379 - -
Bisa11g1001 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Bisa11g1001 387 PANTHER TARGET OF ERK KINASE MPK-1 52 377 - -
Bisa11g1001 387 MobiDBLite consensus disorder prediction 1 27 - -
Bisa11g1001 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 379 IPR013083 -
Bisa11g1001 387 Pfam Ring finger domain 331 373 IPR001841 -
Bisa11g1001 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Bisa11g1001 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1001 Bisa-ChrBisa11 26731853 26757720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1001 1 382 C3H Transcription Factor Family AT1G68070 46.494 6.21e-114 334