Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0913 ATGAATAGTGATCCATCTAGAGACGTTGAAAGTCGAGGTCGTCGTCAACTATTAGATCCTTCCGCCCACATTCCACTTCACCTCTTCACCTCCTCTGTGTCGCTTCGCTGCTCACTGTGTTCCTCGCTCTCAGAGTTCAATCCACCACGCAACGCAACAATGGCGAGCGAGCTTGAAAAGAAAGCCAAAGAAGCGTTCGTCGACGACGACTTTTCTCTGGCTCTTGACTTGTACTCTCAAGCCATTGACTTGGATCCAACCAACGCCGATCTATTTGCAGATAGAGCTCAGGCCCACATTAAACTCAACAACTTCCCCGAAGCGATTTCTGATGCAAACAAAGCAATCGAATTGAACCCGTCAATGGCAAAGGCGTACCTTCGGAAAGGGGCAGCGTGTGTTAAACTTGAAGAGTATCATACTGCGAAGACAGCACTACAAATTGGTGCTTCTTTGGCTCAGAATGATTCAAGATTTACCAAGCTGATCGAGGAATGTGATTGCCATATTGCAGAAGAATCAAATGGAAGCACTTGCTCTTCATTACCAAATGGACCAGCATTGACTGTATCGCATGGTACAACTGAAGCTGAAAAAGTTGGTCGTGTATCCCAAATGGACACAGATACCTCTGTGAAACCAAAATACAGACAAGAATTTTACCAGAAACCAGAGGAAGTGGTGTTGACAATATTTGCAAAAGGAATACCAGCCAAAAACGTGGTTGTTGAGTTTGGTGAACAGATTCTGAGCGCTACTATTAATGTTCCTGGGCAAGATGCCTATCATTATCAGTCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGATTTGAGGTGTTGTCAACCAAAATTGAAATCCGTCTGGCAAAAGCTGAAGCCATTAATTGGACATCGTTTGAATATAGCAAGGATGCACTTCCCCAGAAAGTAAATATGCCATCAATTGGATCTGGAAGGCCTGCATACCCATCATCAAAGCTGACGAAAGATTGGGATAAACTGGAAGCTCAAGTGAAGAAAGAGGAGAAAGAAGAAAAGTTAGATGGTGATGCCGGCTTGAACAAACTGTTCCGAGATATATTCCAAAATGCAGACGAGGACATGAGGAGAGCGATGACCAAGTCTTTTGTGGAGTCGAACGGAACAGTGCTGTCAACAGACTGGAAAGAAGTGGGATCAAAGAAAGTGGAAGGCAGTCCTCCGGATGGCATGGAGTTGAAGAAATGGGAATACTGA 1242 0.4428 MNSDPSRDVESRGRRQLLDPSAHIPLHLFTSSVSLRCSLCSSLSEFNPPRNATMASELEKKAKEAFVDDDFSLALDLYSQAIDLDPTNADLFADRAQAHIKLNNFPEAISDANKAIELNPSMAKAYLRKGAACVKLEEYHTAKTALQIGASLAQNDSRFTKLIEECDCHIAEESNGSTCSSLPNGPALTVSHGTTEAEKVGRVSQMDTDTSVKPKYRQEFYQKPEEVVLTIFAKGIPAKNVVVEFGEQILSATINVPGQDAYHYQSRLFGKIIPDKCRFEVLSTKIEIRLAKAEAINWTSFEYSKDALPQKVNMPSIGSGRPAYPSSKLTKDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQNADEDMRRAMTKSFVESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0913 413 SMART tpr_5 123 156 IPR019734 GO:0005515
Bisa11g0913 413 SMART tpr_5 55 88 IPR019734 GO:0005515
Bisa11g0913 413 SMART tpr_5 89 122 IPR019734 GO:0005515
Bisa11g0913 413 Coils Coil 326 346 - -
Bisa11g0913 413 Pfam SGS domain 331 411 IPR007699 -
Bisa11g0913 413 CDD p23_CS_SGT1_like 219 302 - -
Bisa11g0913 413 FunFam Protein SGT1 homolog 54 180 - -
Bisa11g0913 413 ProSiteProfiles TPR repeat profile. 89 122 IPR019734 GO:0005515
Bisa11g0913 413 Gene3D - 214 305 IPR008978 -
Bisa11g0913 413 Pfam Tetratricopeptide repeat 70 109 - -
Bisa11g0913 413 Gene3D Tetratricopeptide repeat domain 41 176 IPR011990 GO:0005515
Bisa11g0913 413 ProSiteProfiles TPR repeat profile. 55 88 IPR019734 GO:0005515
Bisa11g0913 413 PANTHER PROTEIN SGT1 HOMOLOG 54 411 IPR044563 GO:0051087
Bisa11g0913 413 ProSiteProfiles SGS domain profile. 323 413 IPR007699 -
Bisa11g0913 413 FunFam Protein SGT1 homolog A 211 314 - -
Bisa11g0913 413 SUPERFAMILY HSP20-like chaperones 208 308 IPR008978 -
Bisa11g0913 413 ProSiteProfiles CS domain profile. 213 302 IPR007052 -
Bisa11g0913 413 Pfam CS domain 218 292 IPR007052 -
Bisa11g0913 413 SUPERFAMILY TPR-like 54 166 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0913 Bisa-ChrBisa11 25208842 25215181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0913 52 165 U-box Gene Family AT3G07370 27.193 1.24e-07 50.8