LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g0880	ATGACTACGCCATCCATCAAATACGCCAACCATACAAAGCTAGTAACGCCAGAAGAACAACACCGGCTGTCCCGAGGGACCAAGTATCCGAGAGTTGTTCGAATATGTGTGAAAGACAGCGACGCCACCGACTCCTCCAGCGACGAAGAAGGGGAAGCTTCCGTCACGCGCCACCGAGTGAGGAAGTTCGTCAACGAGATTACCATCCAGTGCGGCTCCTCCACCCAAAGCGACGTTGCGAAGCCTAAGAGCAAGGTTAGCAAGAGTAATACTATTAGGAACAGACTTATGGGGAGTCGGCGAGCGATGAAGGTGTCGTCGGGGAAGAAGTTCAGGGGAGTGAGGCAGAGGCCCTGGGGGAAATGGGCGGCGGAGATCAGAGATCCGTTGCGACGTGTACGGCTGTGGCTGGGCACGTACGAAACGGCAGAGGAAGCTGCCTTGGTGTACGATAAAGCAGCCATAAAGCTTCGAGGAGCAGAGGCGCTGACCAATTTCATCACGCCACCGGGTAAGGCCTGCGAGGAGGAAGAGAAAAAACTGAGATCGCCGAAATCCGTTCTTCGCTCTCAGTGTGGCAGTTTGTCAGAGGAAGTTGAAGCGGAATCTGTTACAACCAAAGATGATACAAGCGAATGTCGGGACGAATCGTCGTCCTCCTCATGGGTATCGGAGAATATCTCCGATTACCCGGCGGATATATTCGACTTCCAGAGTTCGTTGCCGGACATTTTTGACAGCGCTGACATACCAGAAAGCATCGGCTCCGATACATTTCTGGCTCCCTCTGAGGATTTCGGTTTGGATTTGGATTCTGATTTCAGGTTTGGATTCTCGAATTGGCATAGAGATGACTACTTCCAAGATATCGGCGATTTGTTTGTTTCAGATCCGCTTGTGGCTCTTTGA	909	0.5193	MTTPSIKYANHTKLVTPEEQHRLSRGTKYPRVVRICVKDSDATDSSSDEEGEASVTRHRVRKFVNEITIQCGSSTQSDVAKPKSKVSKSNTIRNRLMGSRRAMKVSSGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAALVYDKAAIKLRGAEALTNFITPPGKACEEEEKKLRSPKSVLRSQCGSLSEEVEAESVTTKDDTSECRDESSSSSWVSENISDYPADIFDFQSSLPDIFDSADIPESIGSDTFLAPSEDFGLDLDSDFRFGFSNWHRDDYFQDIGDLFVSDPLVAL	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g0880	302	PRINTS	Ethylene responsive element binding protein signature	133	149	IPR001471	GO:0003700\|GO:0006355
	Bisa11g0880	302	PRINTS	Ethylene responsive element binding protein signature	111	122	IPR001471	GO:0003700\|GO:0006355
	Bisa11g0880	302	FunFam	Ethylene-responsive transcription factor 2	109	168	-	-
	Bisa11g0880	302	CDD	AP2	109	166	IPR001471	GO:0003700\|GO:0006355
	Bisa11g0880	302	Gene3D	AP2/ERF domain	109	168	IPR036955	GO:0003700\|GO:0006355
	Bisa11g0880	302	ProSiteProfiles	AP2/ERF domain profile.	110	167	IPR001471	GO:0003700\|GO:0006355
	Bisa11g0880	302	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	30	200	-	-
	Bisa11g0880	302	SMART	rav1_2	110	173	IPR001471	GO:0003700\|GO:0006355
	Bisa11g0880	302	MobiDBLite	consensus disorder prediction	201	215	-	-
	Bisa11g0880	302	SUPERFAMILY	DNA-binding domain	110	166	IPR016177	GO:0003677
	Bisa11g0880	302	MobiDBLite	consensus disorder prediction	199	220	-	-
	Bisa11g0880	302	Pfam	AP2 domain	110	159	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g0880	Bisa-ChrBisa11	24459336	24460244	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g0880	1	302	AP2-EREBP Transcription Factor Family	AT4G23750	40.678	5.54e-60	193

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa11g0880		AP2	4.5e-13	CL0081