Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0872 ATGGCTGACGTAAGTGCTGAAGTATCCTCCTCCCACGCCGATCAAGTCCCTGCGAAGAGGTCTCGGAGCCGAAGGGCGTTGAAGGACAAAAACCCATCAACAAATGAGGCCACCGTCGTGGCTAAGAAGGTGTCTGAGTCCTCCACACCACCGATTTCAATGGAATCAGAGTCCGTAAAGGAGAACCAGCAGAGTGTGTCTCAACCTAAGGGAAGAGCTGCCTCCAGAAAACAGTCGAAGCAATCTTTTGAGAATGACCTGCTAGAAATGCAGGAGATGCTGCAGAAGCTGCGTCTTGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGCCAAAGACGAGATGTTGAAGCAGAAGGCTGAAGAGCTTGACGAGCGTGGCCGCGAGCAGGAGAAGCTTCAGATGGAGTTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTACCATGAATTTGTTGCCTATGCTAAGAGACCAGGAGCAAGAAAAGGACAAGAAGAAGAAGAAGAATGGATGCCCTGAGAAGAAAAGGCCTCCTCCACCTTACATTATGTGGAGTAAAGATCAATGGGCTGAGATTAAGAAAGCGAATCCGGAGGCAGAATTCAAGGATATTACAAACATGTTAGGGGCTAGATGGAAGACCATTAGTGAAGAAGAGAAGCAGCCTTATGAGGAGAGGTATGTTATTGAGAAAGAAGCTTACTTGCGGGTAATTGCCCAGGAGAAACGTGAAAGCGAGGCAATGAAGCTCTTAGAGGAGGAGAAAAAGCAGAGGACTGCCATGGAATTGCTTGAACAGTACATGCAGTTCAAACAAGAGACAGAGAAAGAAAGCAAGAAGAACAGAAAAGAGAAGGATCCATTGAAACCAAAGCATCCAGTGTCAGCTTTTTTCTTGTACGCAAATGATAGGAGGGCAGCTATTCTTGAAGAGAACAAGAGTATCTTGGAGGTGTCCAAGATCACAGGTGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAAACCGTATGAAGAGATGGCAAAGAAGAATAAGGAGAAATATAATCAAGAAATGGAGGCTTATAAACAGAAGAAGGAGGAGGAGGCTGCGAATCTCAGAAAGGAAGGGGAGGAGCAGATGAAGGTTCAGAAACAGGAAGCCCTGCAGCTGCTGAAAAAGAAGGAGAAAACAGATAATCTGATTAAGAAATCGAAGAAGAAGAAACAGAACAAGGAAGACAAGAATTCTGATCCTAACAGACCCAAGAGACCACCATCCTCATTTATCCTATTCAGCAAGGAAGCAAGGAAGAGTGTACAGGAGGAACGAGCAGAAATGAATAACTCGACCCTGAACGCACTAATATCGGTGAAATGGAAGGAACTGAGTGAGGGAGAGAGACAAGTGTGGAATGAGAAAGCTGCAGAAGCAATGGAGGCATACAAGAGGGAGATGGAGGGATACAACAAATCCCTGGCTGCAAAGTTGGAACGATGA 1479 0.4544 MADVSAEVSSSHADQVPAKRSRSRRALKDKNPSTNEATVVAKKVSESSTPPISMESESVKENQQSVSQPKGRAASRKQSKQSFENDLLEMQEMLQKLRLEKEKTEELLKAKDEMLKQKAEELDERGREQEKLQMELKKLQKLKEFKPTMNLLPMLRDQEQEKDKKKKKNGCPEKKRPPPPYIMWSKDQWAEIKKANPEAEFKDITNMLGARWKTISEEEKQPYEERYVIEKEAYLRVIAQEKRESEAMKLLEEEKKQRTAMELLEQYMQFKQETEKESKKNRKEKDPLKPKHPVSAFFLYANDRRAAILEENKSILEVSKITGEEWKNMTEEQKKPYEEMAKKNKEKYNQEMEAYKQKKEEEAANLRKEGEEQMKVQKQEALQLLKKKEKTDNLIKKSKKKKQNKEDKNSDPNRPKRPPSSFILFSKEARKSVQEERAEMNNSTLNALISVKWKELSEGERQVWNEKAAEAMEAYKREMEGYNKSLAAKLER 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0872 492 Gene3D High mobility group box domain 169 250 IPR036910 -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 17 31 - -
Bisa11g0872 492 CDD HMG-box_AtHMGB6-like_rpt1 175 242 - -
Bisa11g0872 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 290 356 IPR009071 -
Bisa11g0872 492 Coils Coil 465 492 - -
Bisa11g0872 492 SUPERFAMILY HMG-box 410 486 IPR036910 -
Bisa11g0872 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 174 242 IPR009071 -
Bisa11g0872 492 Pfam HMG (high mobility group) box 290 356 IPR009071 -
Bisa11g0872 492 Pfam HMG (high mobility group) box 175 237 IPR009071 -
Bisa11g0872 492 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Bisa11g0872 492 Gene3D High mobility group box domain 273 370 IPR036910 -
Bisa11g0872 492 SUPERFAMILY HMG-box 277 361 IPR036910 -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 32 76 - -
Bisa11g0872 492 Coils Coil 253 273 - -
Bisa11g0872 492 Gene3D High mobility group box domain 394 487 IPR036910 -
Bisa11g0872 492 Coils Coil 338 408 - -
Bisa11g0872 492 SUPERFAMILY HMG-box 161 238 IPR036910 -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 269 292 - -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 1 86 - -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 326 425 - -
Bisa11g0872 492 Coils Coil 80 142 - -
Bisa11g0872 492 SMART hmgende2 289 357 IPR009071 -
Bisa11g0872 492 SMART hmgende2 173 243 IPR009071 -
Bisa11g0872 492 SMART hmgende2 414 484 IPR009071 -
Bisa11g0872 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 326 392 - -
Bisa11g0872 492 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 489 IPR044601 GO:0003677
Bisa11g0872 492 MobiDBLite consensus disorder prediction 269 291 - -
Bisa11g0872 492 MobiDBLite consensus disorder prediction 147 183 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa11g0872 HMG_box 2.4e-16 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g0872 11 24297052 24299057 Bisa11g0872 11 24297052 24299057 ECH