Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0841 ATGGGTTTTTGTGTTTTCTTCCTCTCGTTGAGCCTCATCCTCGTTGCGTTACTCTGTGTGACGAGAACAACAGCTCAATTATGTTCCACCACATCCTGCGGCGGACTCTCCATTGACTTCCCTTTCCAATTAACGGAATCGAATCAGCGACCCTTCTGCGGCTACCCTGGCTTCGAACTCTCCTGCAACAATAAAAACCAAACCTTGCTCTCTCTTCAGTACTCCGGCGACTTCGTCGTGACCAGAATCTCCTTAGAGAACCAACGATTGTGGATCAACGACCCCGACGGCTGCCTCCCACGGCGCCTCCGCGCTAACCTCACTCTCAACGGTTCTCCGTTCCAGTTCGGCGACTCTTATAACTTGGTCGATTACAAATTCCTTAACTGCCCTTCTAATGTCACGTCGACGTTTCCGTTTACTCTGCCCCCCATAAGCTGCCTTGGCTCCAGCAACGACACCAACCATTCGGTGTACGCAGTGATAGCTAATTCTCAATTCCCCATGTCGGGGACTTCGTCGTGCGAGGTCATTTCCTATGCTAAGATTCCCGTTGCTTCTGGGTCGTTTTGGATGGATTACGAAGCTGATATACAGTTGCAGTGGGACAACCCCAATTGTGGGGACTGTGAAGCACAAGGAGGACGGTGTGGGTTTGCCTTTGGGAATTCTGCCCCCTACGTTGCTTGTTACGGTGGTTCTGATTCTGATTCAAACCAATCTCAAGGTCTTTCGAGGAGAGCCAAGTATGGTGTGGCTCTGGGGCTTGGCATCCCTTCATTTCTAGGTGCGGTGATTTTTGCATGTATCTTCTGGGGCAAGATGAAGGCGCAGGACGAACGACGTCGTCGTCTAGCAAACACAGAGTTTTCCACCTCAATCATTCCACATCCTACGGTTCTAGTGATGGGGCTTGATGGTGCAACCATAGAGAAATACCCGAAGACGCAGCTGGGTGAAAGTGGACGATTGCCCAACCCAAACGACAACGTTTGCTCTATATGTCTGAGTGAGTACCAGCCCAAGGACGAGCTAAGGACCATACCAGATTGCAACCACTATTTTCACGCCACGTGCATCGATGGCTGGCTCAAGATGAATGCCACGTGCCCCTTGTGTCGCAAGTTACCTAGCCCACCCTCTTTGGCTCCGTCTAATGTTTTGCCTTTACCAGCCCCGGCAGATTCTTCGTGA 1194 0.5109 MGFCVFFLSLSLILVALLCVTRTTAQLCSTTSCGGLSIDFPFQLTESNQRPFCGYPGFELSCNNKNQTLLSLQYSGDFVVTRISLENQRLWINDPDGCLPRRLRANLTLNGSPFQFGDSYNLVDYKFLNCPSNVTSTFPFTLPPISCLGSSNDTNHSVYAVIANSQFPMSGTSSCEVISYAKIPVASGSFWMDYEADIQLQWDNPNCGDCEAQGGRCGFAFGNSAPYVACYGGSDSDSNQSQGLSRRAKYGVALGLGIPSFLGAVIFACIFWGKMKAQDERRRRLANTEFSTSIIPHPTVLVMGLDGATIEKYPKTQLGESGRLPNPNDNVCSICLSEYQPKDELRTIPDCNHYFHATCIDGWLKMNATCPLCRKLPSPPSLAPSNVLPLPAPADSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0841 397 Pfam Wall-associated receptor kinase galacturonan-binding 28 94 IPR025287 GO:0030247
Bisa11g0841 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 377 IPR046948 -
Bisa11g0841 397 SUPERFAMILY RING/U-box 326 379 - -
Bisa11g0841 397 CDD RING-H2_EL5-like 332 374 - -
Bisa11g0841 397 Pfam Ring finger domain 331 374 IPR001841 -
Bisa11g0841 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 379 IPR013083 -
Bisa11g0841 397 ProSiteProfiles Zinc finger RING-type profile. 332 374 IPR001841 -
Bisa11g0841 397 SMART ring_2 332 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0841 Bisa-ChrBisa11 23614427 23616365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0841 26 383 C3H Transcription Factor Family AT2G46495 35.501 9.45e-59 193