Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0839 ATGACTCCACCTAATTACCCTGTCTATCAAATAACCTCCTTTCTTTGCTTATTCGTGTTCTTCTTCCTCGTTCACCGCGCAAGTAGCGCTGAAGCCGATGACGTCTGCGATAGCACGTCTTGTGGTGGAATCGATATTCGCTTTCCTTTTGGCCTGAGAGAAGTGTATCCGAACCCGAACCCGAACCGGCAGGGCGGTGGTCGCTGCAGCTACCCGAAGTTCCAGGTTCGATGCGACAACCAGAGCCGGACCCTGCTTTCTCTTCCAAATTCCGATGAGTTAGTCATCAAAAGCATCAATTACGAGTACCAAACCATAAAGGTCAATGACCCCAACGACTGCCTACCACGACGGTTTCTTCATAACCTGAACCTCTCGGACTCACCTTTCAGGTTTGACCCGACCGTTTATAACCCCCTTAACCTCACCTTCCTTCGTTGCTCCTCCAACTTCACCGAATCATTCCCACTCTTTCCCGTCACTTGCCTCAGCGATCACAACAATTCCTCATTCTCAGTGATCGTCATGTGGTTGCCCGGCGGAGTTGGGCCACGACGTTTGTCTGAATGGTGCGATGCGATATCTTCGGTCATTGTTCCCATCTCGACCACGGCCGTCCCGCCTTTCTGGCCCCCTCTCACCGATGATATCCAGTTGACGTGGACTCGGCCCAGTTGCGGGGACTGTGAAGCCCAGGCCCAAGATTGTGGGTTCGCCACCGATAGGGGTCTCCGAGTCGCGTGCTTCCCCCGTCCCCAGAAGGAAAACTCAGGTATTCCAAGAAGTGCCAAATACGGGTTAACAATAGGAGTGGGAATTCCTGGACTCCTGTGTTTGATTGGAATTTCTTACTTTATGTGCGGCAAGGTTAGAATGTACGCTCAGCGTCGTGACCCCAGGCCCATCACAGATATTCCTGTCTCCATCGTGCTACAGGCCGGCCCTTTTAGAATGGGTCTTGATGGGCCCACAATAGAAAAATATCCCAAGACTCTTCTTGGTGAGAGCGGGCGGTTACCCAATCCCAATGATAATACCTGCCCAATCTGCCTGTCCGAGTATGAGCCCAAGGAGACGTTGAGGACCATTCCTGAGTGTAACCATTATTTTCATACACACTGTATAGACGAATGGCTCAAGATGAACGCCACGTGTCCCCTGTGCCGCAATTCACCTACACTCACCCCTTCTTCTAATTCTTCTTTGTCTCCCTCTTCCTCCATATCCTCTTCGTCGTAA 1239 0.5141 MTPPNYPVYQITSFLCLFVFFFLVHRASSAEADDVCDSTSCGGIDIRFPFGLREVYPNPNPNRQGGGRCSYPKFQVRCDNQSRTLLSLPNSDELVIKSINYEYQTIKVNDPNDCLPRRFLHNLNLSDSPFRFDPTVYNPLNLTFLRCSSNFTESFPLFPVTCLSDHNNSSFSVIVMWLPGGVGPRRLSEWCDAISSVIVPISTTAVPPFWPPLTDDIQLTWTRPSCGDCEAQAQDCGFATDRGLRVACFPRPQKENSGIPRSAKYGLTIGVGIPGLLCLIGISYFMCGKVRMYAQRRDPRPITDIPVSIVLQAGPFRMGLDGPTIEKYPKTLLGESGRLPNPNDNTCPICLSEYEPKETLRTIPECNHYFHTHCIDEWLKMNATCPLCRNSPTLTPSSNSSLSPSSSISSSS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0839 412 Pfam Ring finger domain 345 389 IPR001841 -
Bisa11g0839 412 SUPERFAMILY RING/U-box 341 393 - -
Bisa11g0839 412 Pfam Wall-associated receptor kinase galacturonan-binding 36 110 IPR025287 GO:0030247
Bisa11g0839 412 ProSiteProfiles Zinc finger RING-type profile. 347 389 IPR001841 -
Bisa11g0839 412 CDD RING-H2_EL5-like 347 389 - -
Bisa11g0839 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 393 IPR013083 -
Bisa11g0839 412 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 392 IPR046948 -
Bisa11g0839 412 SMART ring_2 347 388 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0839 Bisa-ChrBisa11 23580810 23583205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0839 36 393 C3H Transcription Factor Family AT2G46495 34.511 2.51e-56 187