Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0825 ATGGAAGCGGATTTTGTCACCAATGACATGTTCACAGAAGATACCTTGAAGGCCGATGACAATGCGAATAATGTAAACTTGACGGATAGTTTCGTTATTGAAGGGGAAAGATGTGGAATTTGCATGGATATTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAATCTCTGCCCACTTTGCCAAAATGAGTTTCAGTTGATTACATGTGTTCCAGTATATGATACCATTGGGAGCAATAAAGTTGAAGATGACACATTCTCCAGAGATGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCATCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGTAGTGGATCTGCAACTACTGAAGGAGATTCAAGTCTTGATACATCTATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCAGACATTACATGGTTATGCCCTAGGTTTTGTTTTAGATGTGTACCAGATGAAGTTTCTGAAAGAATGGATGCCAGTTCATTGGAGAGGACAGTCATGGAATCTAACCCAGAAAATGGCAACAATGTATGTCAGGCTGAAGAATCTTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAAATCAGTGGACTCCAGCATCAAGCCAGGATTTGTCACCCCTTGAAGTTAACAAGAATCCAATGACCGAATCTTGTGTTTCCATATCTGACTCGTTGGAGAGGACAGTGATGGAATCTAACCCAGAGAATGGTAACAATGTATGTCAGGCTGAAGAATCTTTTTCAGGAAAAGTGTCTGTGTCCGTTGCTGATGCTGGAGAGACAGCCGTCGTTGTCTCTTTGGTTGAAGGAAATCAATGGACTCCAGCATCACGCCAGGATTTGTCACCCCTTGAAGTTAACAAGAATCCAATGACCGAATCTTGTGTTTCCATATCTGACACAAATAATCACCACAGTAAGACAGAGAAGACTTTTATTTCACCAATGGAGGAAAAGGAGTTGATGTTGTCCTTATCACACAATGTATACTCTAACTTACCTTCTAACTCCTTAGGGCTTGATGATTTGAAAAAAGGCGCATATGGAGAAAGGAGTGAACTAAGTAGCTTCAGTGGAGGCAAGATATTGGATGAATCCCATGACAGAACTAGTCCATCTAGAAATGATTCTGATATGGGTGTTCATCTTGGTTTGTCAGTGGGCTCCTTTCTATCTGTTGATGAACCCGACATAAATCCCTCAAAAGGTCAAGGAACTGATATCCAGCAGTCAAGTTTAGAAGAATTTATTGTGAAAGGAGATGAAATTGAACCCATTGCTGATAAGGAAAATACCAAAGTTACGGGTGGAAAGAGAAAGCGTGTTGATTACAGTAATGATCAGGTTCATGTAGAAGTTTACGACACAGATGCCAAACTTGAACCTGCTGTTGAAATGTCACAAGAGAGACCTAGAGCTGATGGCAGTCAACTTAATCACAAGGACTCAGCTGATGCTTCTCTTTCAGATAATACTAAAAAAGGCCCTTCTATTGCAGCTGTTTCCAGAGATGACAATCTAAAACATCATCCGCCAAAGGATAATGCCGCATCAGATATAATGAGTATAGTTAAAGGCACGAATCAGAGGCTTTCCAAGGGACTTTCTGGCACTAAATCTTATAGCAAGTTATCTGAAAACAATGAAAATCTGGCAGGGTTGAGGGTAAAAAAGATCATGAAGAGAGCTCCTGATCATGGGGAATCATCTTTGGTGGTTCAAAACCTCAGAGAGAAAATTAGAGAAGCTGTCCGTAACAAATCCTCTGAAAATTTTGGAGAAAACCTTTTTGATACAAAGCTTCTTGCAGCATTCAGGGCTGCTATAGCAGGGCCTAAAACTGAACCTGTAAATAAGCTGTCCCCTATAGCTTTGAAGGCAAAGAAGAGAATGTTGCAAAAAGGGAAAGTTCGTGAACATCTAACAAAGAAAATTTTTGGGACATCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGGGCAACAAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTTGATCTCCTGAGAGAGAGTTCAGAGAGCCCAGAATCAAAAGAAGGTCCTAAGTGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACGTCTGTTTTCCCACGAAAAGATGATGTGAAGCCACTTTCTGCTCTTGAAACTACTTCTAACTCAGAGCAGAATAAACAACTTAACTCCTCAGGAAAAGCATCAAATCAGCCTCTTGATAATAGCACTATTAAAGCAACAGAGACAAATAATGTTTTGCCGAAGGCCAGAGTTTGCTCATCTGAAAATAAAGTAAATAAGAAGATTGTACATGGCTCGATCGGTGATAATTCTGCTTCTGGTAAAGTACCTTTGAGTAGACATTCAGAAGGTACATCAGTTTCTTGTTCTGGTGGTTCCAGAGTTGACACAAAAGCGTCAGGTATTAAATCAGATTGCATGAAGATTGACAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGAAAAACAGCTGCAACTGGGAAGAAAGCAACAAATGAAAATCAGGAAGACAATGCAATCCTTAAAGGAAACTATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCTAGTCACCACAATAAAATTCCTTTATCAGTAAGGCAGACACAACTATACCGGTTGACAGAGCACTTCCTGAGAAAAGCAAATCTGTCAGTCATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCTAACAGCAAGTTAGTGTATCTGAATCTCTGTTCACAAGAGCTCTTGCACCGCTCAAATAACAGAAAATCCAATGAAGCAACAGATGTAATTCCACAGGAGCCATCAGAAGTTCCTACTGATAGATCAGAACAAAATACTGATGGTCTTTCAAATGACTCTGCGGTTGAAATAGCCCTGAAAAATGCTGGTCTTCTGTCTGATTCACCTCCTTGTAGTCCCCATGAGAGGAGGGAAATATCCAATAAAAATGATCTGTCAGAACCTGATAATATACTTGAAATGGATTCTCAACCAGAGGTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGACGAAGATTACATTGGTGCAAGTGTTGCCAAAGTCGTAAACCCACAAGAAGAAGAAAGTGAGTCAAAAATGAAGCTCATTTTCTCTACCATGAACCTGAAAAATTCAGAAACTTCTTTGGATAGTGTGGACTATCAGAGGTTGGAAAAAGTACCACAAGATCCTTGCAGCTCATCGAATCATTATGATGCAGGCAATGGGGATTCTGCAATTGATGCAGAGATTGGCCAGCCAACTGTTCCTTCTGAGGGCCTTCTCAGTGAGGGTGCTGTTGAGCCATTGGATGCAGAATTTGAAGAATTATATGGTCCAGACAAAGAACCACTTGCAAAAAAATTTCCAAATGAAGAATTAAGAGCATTATATGGTGAGAGCAAGACAGAAACTTCTAATGAGGGCAATGACTGTCATAATAAAGAACAAGTAACAGACCGAGAAGTGAATGCATCTGAATCTGGGAATGGCAATCTTGCAAAGACTGTAGTTGTCACTGCTATTGCCGATAATTCATCAAAGACATCTGGTATTAGTGAAAACTTCGGGAAGAAGGGAGAGAAGTCTGACACCGCTGCAGAGCAGACTGACTCAGCAAATCATGTAGCTAGGAAGGTAGAAGCTTACGTCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTGATCAATGCTGAGCAGTACAGGTGGGCTGTCGCAAAAACAACTGAGAAGGTTATGAAACACCATGGCAAGGCCAAGAATGCCAATTTCCTCATAAAGGAAGGTGAGAAAGTGAAGAAACTTGCGGAGCAGTATGTTGAAGCAGCACAACAGAATAGAAAAAAGTGA 4152 0.407 MEADFVTNDMFTEDTLKADDNANNVNLTDSFVIEGERCGICMDIVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDTFSRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKIRSGSATTEGDSSLDTSIACDSCDIWYHAFCVGFDPEGTSDITWLCPRFCFRCVPDEVSERMDASSLERTVMESNPENGNNVCQAEESFSGKVSVSVADAGETAVVVSLVEGNQWTPASSQDLSPLEVNKNPMTESCVSISDSLERTVMESNPENGNNVCQAEESFSGKVSVSVADAGETAVVVSLVEGNQWTPASRQDLSPLEVNKNPMTESCVSISDTNNHHSKTEKTFISPMEEKELMLSLSHNVYSNLPSNSLGLDDLKKGAYGERSELSSFSGGKILDESHDRTSPSRNDSDMGVHLGLSVGSFLSVDEPDINPSKGQGTDIQQSSLEEFIVKGDEIEPIADKENTKVTGGKRKRVDYSNDQVHVEVYDTDAKLEPAVEMSQERPRADGSQLNHKDSADASLSDNTKKGPSIAAVSRDDNLKHHPPKDNAASDIMSIVKGTNQRLSKGLSGTKSYSKLSENNENLAGLRVKKIMKRAPDHGESSLVVQNLREKIREAVRNKSSENFGENLFDTKLLAAFRAAIAGPKTEPVNKLSPIALKAKKRMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRESSESPESKEGPKCQAKNPILSRLYLADTSVFPRKDDVKPLSALETTSNSEQNKQLNSSGKASNQPLDNSTIKATETNNVLPKARVCSSENKVNKKIVHGSIGDNSASGKVPLSRHSEGTSVSCSGGSRVDTKASGIKSDCMKIDKRKWALEVLARKTAATGKKATNENQEDNAILKGNYPLLAQLPADMRPVLAPSHHNKIPLSVRQTQLYRLTEHFLRKANLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSNNRKSNEATDVIPQEPSEVPTDRSEQNTDGLSNDSAVEIALKNAGLLSDSPPCSPHERREISNKNDLSEPDNILEMDSQPEVDIYGDFEYDLEDEDYIGASVAKVVNPQEEESESKMKLIFSTMNLKNSETSLDSVDYQRLEKVPQDPCSSSNHYDAGNGDSAIDAEIGQPTVPSEGLLSEGAVEPLDAEFEELYGPDKEPLAKKFPNEELRALYGESKTETSNEGNDCHNKEQVTDREVNASESGNGNLAKTVVVTAIADNSSKTSGISENFGKKGEKSDTAAEQTDSANHVARKVEAYVKEHIRPLCKSGVINAEQYRWAVAKTTEKVMKHHGKAKNANFLIKEGEKVKKLAEQYVEAAQQNRKK 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0825 1383 Pfam Ring finger domain 37 77 IPR001841 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1229 1263 - -
Bisa11g0825 1383 SMART ring_2 38 76 IPR001841 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 847 876 - -
Bisa11g0825 1383 ProSiteProfiles Zinc finger RING-type profile. 38 77 IPR001841 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1281 1306 - -
Bisa11g0825 1383 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1018 1047 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 415 438 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 854 876 - -
Bisa11g0825 1383 SUPERFAMILY FYVE/PHD zinc finger 153 194 IPR011011 -
Bisa11g0825 1383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 116 IPR013083 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1239 1255 - -
Bisa11g0825 1383 PANTHER RING FINGER PROTEIN 41, 151 119 1374 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1060 1088 - -
Bisa11g0825 1383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 189 IPR013083 -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 514 577 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1159 1194 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 790 823 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 514 536 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 537 553 - -
Bisa11g0825 1383 MobiDBLite consensus disorder prediction 1288 1306 - -
Bisa11g0825 1383 SMART PHD_3 136 188 IPR001965 -
Bisa11g0825 1383 SUPERFAMILY RING/U-box 23 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0825 Bisa-ChrBisa11 23430297 23441622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0825 38 89 C3H Transcription Factor Family AT3G58030 37.037 3.97e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g0825 11 23430297 23441622 Bisa11g0825 11 23430297 23441622 ECH