Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0811 ATGTCAAATCGCGAAGGGTCTTTTTCGATGTCGGCGTCTGAAGGTGGTTGTAAAGTGGATGATCTGTATGAAGAACTATGGAAGGCTTGTGCTGGACCCCTTGTCGATGTTCCTCGGGCCAACGAGAGGGTCTTTTATTTTCCACAAGGACACATGGAGCAATTAGAGGCATCAACAAACCAAGAACTAAATCATAGGATACCGCTGTTCAATCTTCCCCCAAAGATCCTTTGTCGCGTGGTGAACGTCCATTTACTGGCTGAACAAGAAACAGACGAGGTTTATGCACAAATTACTCTGGTGCCAGAATCCAATCAAACTGAGCCTAAAAGCCCAGATCCATGCCCTGCTGAACTTCCAAGGCCAACAGTTCACTCATTCTCCAAGGTCTTAACTGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACGGAATGCCTTCCTCCTTTGGACATGTCCCAATCAACTCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGTTATGAGTGGCGCTTTAAGCATATATACCGAGGTCAGCCACGTAGACACTTGCTTACAACTGGATGGAGTACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTCTTCTTAAGAGGGGCTAATGGGGAATTACGCGTTGGAGTTAGGCGTCTTGCTCGTCAGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTCCTTGCAACTGCTTCTCATGCCGTTGCAACCCACACCCTTTTTTTAGTCTACTATAAGCCAAGGACAAGCCAGTTCATCATAAGTGTGAACAAGTATTTAGAGGCTATCAAGAATAACTTTGCTGTTGGTATGAGGTTCAAAATGAGGTTTGAAGGAGATGAGTCTCCTGAAACTGACAAAAGATTGTCCGGCACTATAATTGGTGTGGAAGATATTTCTCCTCACTGGGTAAATTCAAATTGGCGATCACTGAAGGTTCAGTGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAAGTAGAACCCTTTCTGGGTCCTGTTACTGCATCTTCAGTTCAACCTGCTGTTGTAAAAGCCAAGAGACCTCGACCACCCAGTGAACTTCCAGATCTTGATACAACTTCTACTGCCTCTGCTTTCTGGAATTCTGAGCTGATACAACCTGATATAACGCAAGCCTGTGTTATGGCTGAAATCAAAAGGAGTGACCTTTCTGGTGTGAGGCATCATAGTCAAACAGAAGGGAGTTGGCTATCTAATCCTCATTCTAGTGGTCCTCCACTCTCGTTCCAGGACACAATAGATGATAGCAAGACTGTGTCTGCTTGGCCTGTTCACTCAGTTCATTCGACACCTCACTCATCCAGATTAAACAATGATCATATGATTGCTCAAGCTGGCAAGGAGAATAAAGTTGAGACTGCTACAAGCTGTCGATTGTTTGGAATTGAGCTTGTTGGTCAATCCAAAAACTCACCTGCTATGGAGAAGGCGCCTGCACATACTGTAGGTGCACCTGATAGGACTTCTGAAAGTCATGTTAGTTCCTTGTCTGTAACTGATTCAGACCCTAAGGGTGATATCTCAAAGCCTTCCCAGGAGGTGAAACATGTAAAGCTGCAAGTATCACCAAAGGAGACTACAAGCAAGCAATTAAGTTCCAGAAGTCGCACCAAGGTTCATATGCAGGGGATTGCAGTGGGTCGTGCGGTGGACTTGACCATGTTGGATGGGTACAATCAGCTTATAGATGAGTTGGAGGAGATGTTTGACATAAAGGGAGAGCTCAAAGTTAGGAACAAGTGGGAAATTGTCTACACTGATGATGAAGGGGATATGATGCTTGTGGGTGATGATCCGTGGCTGGAATTCTGTAGTATGGTCAGAAGAATCTTCATTTGTTCCAGCCAGGATGTGAAGAAGATGAGTGCAGGAAGCAAACTGCCTCTTTCTTCGATAGAAGGTGAAGGGACAGTGATAAGCGGGGACACAGCTGAAACCTGA 2046 0.4541 MSNREGSFSMSASEGGCKVDDLYEELWKACAGPLVDVPRANERVFYFPQGHMEQLEASTNQELNHRIPLFNLPPKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPKSPDPCPAELPRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWRFKHIYRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGANGELRVGVRRLARQQSSMPSSVISSQSMHLGVLATASHAVATHTLFLVYYKPRTSQFIISVNKYLEAIKNNFAVGMRFKMRFEGDESPETDKRLSGTIIGVEDISPHWVNSNWRSLKVQWDEPAAVPRPDRVSPWEVEPFLGPVTASSVQPAVVKAKRPRPPSELPDLDTTSTASAFWNSELIQPDITQACVMAEIKRSDLSGVRHHSQTEGSWLSNPHSSGPPLSFQDTIDDSKTVSAWPVHSVHSTPHSSRLNNDHMIAQAGKENKVETATSCRLFGIELVGQSKNSPAMEKAPAHTVGAPDRTSESHVSSLSVTDSDPKGDISKPSQEVKHVKLQVSPKETTSKQLSSRSRTKVHMQGIAVGRAVDLTMLDGYNQLIDELEEMFDIKGELKVRNKWEIVYTDDEGDMMLVGDDPWLEFCSMVRRIFICSSQDVKKMSAGSKLPLSSIEGEGTVISGDTAET 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0811 681 Gene3D - 124 228 IPR015300 -
Bisa11g0811 681 SMART B3_2 127 229 IPR003340 GO:0003677
Bisa11g0811 681 SUPERFAMILY CAD & PB1 domains 563 645 - -
Bisa11g0811 681 Gene3D - 288 359 - -
Bisa11g0811 681 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Bisa11g0811 681 MobiDBLite consensus disorder prediction 522 540 - -
Bisa11g0811 681 Gene3D - 565 657 - -
Bisa11g0811 681 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa11g0811 681 CDD B3_DNA 125 227 IPR003340 GO:0003677
Bisa11g0811 681 Pfam AUX/IAA family 615 653 IPR033389 -
Bisa11g0811 681 Pfam AUX/IAA family 548 605 IPR033389 -
Bisa11g0811 681 MobiDBLite consensus disorder prediction 505 548 - -
Bisa11g0811 681 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Bisa11g0811 681 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa11g0811 681 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
Bisa11g0811 681 FunFam Auxin response factor 288 360 - -
Bisa11g0811 681 FunFam Auxin response factor 564 657 - -
Bisa11g0811 681 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bisa11g0811 681 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0811 Bisa-ChrBisa11 23306646 23310259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0811 12 662 B3 DNA Binding Superfamily AT4G23980 61.702 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa11g0811 AUX_IAA 8.9e-07 CL0072