Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0713 ATGAAGATTTTCGTCAAGACTTTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCGGAAGACACGGTTGCTGAAGTGAAGAAAAATATAGAAACTGTCCAGGGTGTGGATGTCTATCCTGCTGCACAGCAGATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGCACTACCTTGGAGGAAAATAAAGTAGCTGAAAATACTTTTGTTGTAATTATGCTTTCTAAGAGTAAGAGCTCATCTGGTGAGGGTTCTACTACATCGGCTGCGCCTTCAGCCAAGACCCCATCGACAAGTGCAGCTCCTACTTCCACCTCAGTGTCAACCACACCTCAAGCTCCTGCTACAACTGGGGCATCGCCTGCTCCTTCTCCTGCACCTGCAGCTGCACCTGCTCCTTCTCCCGCACCTGCACCTGCACCTGCTCCCACTTCGGGCACTGCTGTGTCAGAGTCTGATATCTATGGGCAGGCAGCATCTAATCTTGTGGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATTCTTGATGTGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTTCGTGCTCTACGTGCTGCTTACAACAATCCTGAGAGAGCTGTTGAATATTTGTATACTGGTATCCCAGAGCAAGCTGAAGCTCCACCAGTTGCCCGAGTGCCTGCAAGTGCACAAACTGCAAATCCTCCAGCGCCAGCTCCACAATCTGCACAACCAGCATCTGCTCCAACAAGTGGACCTAATTCTAATCCTCTAGACCTCTTTCCCCAGGGCCTTCCCAATGTCGGTTCTGGTGCTGCTGGTGCTGGTGCAGGCACTCTAGATTTTCTGCGCAATAGTCAACAGTTCCAAGCATTGCGAGCTATGGTGCAGGCAAACCCACAAATACTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCAAATCTCATGAGATTGATTCAAGAGCACCAAACTGACTTCCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAACATATTGGGGCAGCTAGCTGCCACCATGCCACAACAAATACCTGTCACCCCTGAGGAGCGTCAAGCAATTGAACGTTTGGAAGCAATGGGTTTTGATCGTGCACTTGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAACTGGCCGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAATGA 1206 0.4867 MKIFVKTLKGTHFEIEVKPEDTVAEVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENTFVVIMLSKSKSSSGEGSTTSAAPSAKTPSTSAAPTSTSVSTTPQAPATTGASPAPSPAPAAAPAPSPAPAPAPAPTSGTAVSESDIYGQAASNLVAGSNLEETIQQILDVGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVARVPASAQTANPPAPAPQSAQPASAPTSGPNSNPLDLFPQGLPNVGSGAAGAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLMRLIQEHQTDFLRLINEPVEGGEGNILGQLAATMPQQIPVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0713 401 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Bisa11g0713 401 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Bisa11g0713 401 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Bisa11g0713 401 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Bisa11g0713 401 SMART CBM 274 317 IPR006636 -
Bisa11g0713 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Bisa11g0713 401 Gene3D - 161 211 - -
Bisa11g0713 401 MobiDBLite consensus disorder prediction 77 117 - -
Bisa11g0713 401 Gene3D - 1 80 - -
Bisa11g0713 401 MobiDBLite consensus disorder prediction 118 142 - -
Bisa11g0713 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Bisa11g0713 401 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Bisa11g0713 401 FunFam UV excision repair protein RAD23 homolog 161 211 - -
Bisa11g0713 401 SUPERFAMILY UBA-like 165 217 IPR009060 GO:0005515
Bisa11g0713 401 Pfam UBA/TS-N domain 168 206 IPR015940 -
Bisa11g0713 401 Pfam UBA/TS-N domain 357 392 IPR015940 -
Bisa11g0713 401 CDD Ubl_Rad23 1 74 - -
Bisa11g0713 401 SUPERFAMILY XPC-binding domain 272 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bisa11g0713 401 SUPERFAMILY UBA-like 338 399 IPR009060 GO:0005515
Bisa11g0713 401 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bisa11g0713 401 MobiDBLite consensus disorder prediction 77 150 - -
Bisa11g0713 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
Bisa11g0713 401 FunFam UV excision repair protein RAD23 B 266 332 - -
Bisa11g0713 401 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bisa11g0713 401 Coils Coil 401 401 - -
Bisa11g0713 401 SMART uba_6 357 394 IPR015940 -
Bisa11g0713 401 SMART uba_6 168 208 IPR015940 -
Bisa11g0713 401 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Bisa11g0713 401 CDD UBA1_Rad23_plant 162 211 - -
Bisa11g0713 401 SMART ubq_7 1 75 IPR000626 GO:0005515
Bisa11g0713 401 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bisa11g0713 401 MobiDBLite consensus disorder prediction 218 265 - -
Bisa11g0713 401 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Bisa11g0713 401 FunFam UV excision repair protein RAD23 1 80 - -
Bisa11g0713 401 Gene3D - 348 396 - -
Bisa11g0713 401 Gene3D - 265 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bisa11g0713 401 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0713 Bisa-ChrBisa11 21498291 21504454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0713 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.15e-09 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g0713 11 21498291 21504454 Bisa11g0713 11 21498291 21504454 ECH