Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0661 ATGCTTTGCTGCACGCTTCTCTGTCCTCACAAGGAGAAAAAGAGCTCACGGAAAGGTGGAGAGAAAAAGCAGAGAGAGAGAGGGAAGAAAGCATATAGACACAAGGGCAGTTTCATCAGATTCTTGGAAGGACTGTGGTTTTGGAAACCTGAATCTTCAAGCGATCACATTCTCCGTCGTCGTTTCTCTGTAATGGCGACGCCAGACGGAGCTGTGGCTGTAATGTCTGGCACTGTGAGCACAGTTGATTCCTCGCCTTCCAAGACTTGCCTGAAGAACTCGCCTCTGAAATCGCCGATTCTGATATTCTCTTTTTTCCATAAAGCTATTCGCTCTGAGCTCGATGGCCTCCATCAAGCCGCCTTGGATTTCGCCTCGAACCAACTAGCTGCCTCTGATATCAAACCCTTGTTCGAGCGCTGCCTTTTTCTTCGTACTATCTATAAGCACCACTGCAATGCGGAGGACGAGGTAATATTTCCTGCCTTAGATATGCGTGTGAAGAATGTTGCACACACATATTTCTTGGAGCATGAGGGAGAGGGTCTTCTTTTTGATCAGTTGTTCAAGCTGCTAAATTATAATTTGCTAAAAGAAGAGAGCTATCGAAGAGAACTAGCTTCTTGTACTGGAGCTCTTCGAACATCAATTAGCCAACATATGTTTAAGGAAGAGGAGCAGGTGTTCCCCTTGGTTATTGAGAAGTTTTCATTTGAAGAGCAGGCATCATTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATTATGGCAGAATTTCTTCCCTGGCTTGCTTCGGACATATCATCTGATGAACATAATGATATGCTTAGGTGCTTGTGCTCAATAATTCCTGAAGAGAAGCTTCTTCAGCAGGTTGTTTTTGGATGGATGGAAGGAGTAAAAATTAGATGTAGAAGCTGCCCAAATGATAAGAAGGATCATTGTCGGAATGCTAGGACACGTGACTTAACCAATTGTTCTGAAAGGGTGCATTGTGCATGTGAGTCTTCCAAAACCGGAAAAAGGAAATGGTTGGAGCTGAGCTTTGACCCCACCAGTTCTGCTATATCATGCCCTATAGATGAAATATTATTTTGGCATAAGGCTATAAAACAAGAGTTGATTGATTTAACTGAGGCAGCCAGGAAGATACAACTTTCTGGAAAATTTTCTGATTTCTCTGCATTTAATGGGAGGCTGCAGTTTATTAATGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGAGCTTTCCTTTTTTCATGAGCATGCAGATGAAGAACTGCAGTTTGACAAGCTTAGGTGCCTGACGGAAGGCATTCAAAATGGTGAAGCTAACTCCAGATCTACTGAAGATTACATGAATTTGAGGTTTTATGCGGAACAAATAATGGACTCCATACTGAAGCACTTTGAAAAAGAAGAAGCTCAGGTTCTACCTCTTGCACGAAAACTTTTTAGTCCCCAAAGACAACGAGAATTACTTTATGGAAGTTTGTGCTTAATGCCTCTGAAATTGATCGAGTCTGTAATACCATGGCTGTTTGGATTTCTTAGTGAAGAAGAAGCAAAGTCATTTCTTCAGAATATGTATATGGCAGCCCCACCAACAGATTATGCATTAATTACACTTTTCTCTGGCTGGGCATGCAAAAGAAATTCCAAGAATAATGATGGTATATGTGCTGCCAGGAGACTGTTGGGGACAGAAATCACTAGCCCATCATTCTGCATATGTACACCTTCATTCTGTCCCAAGAAAAAATCTTCATCCATTCAACAGGATGATGCAGATGGTAGTGGATCAGTCAAGCATGGAAATTCGGAAACAAGGGAAGATAATGATGTTTCTCACCTCATTGAAACTAGGGAATCTCTTAGCTTACTTGGTAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTAAATACAGGTCATCTAGGGGTTGGTTCTTTAATCCCTGCAAAATCTCTGCGATCCTTATCTGATTGTTCTTCTGCACCCTCCCTCAATTCTAGTCTCTTTTTCTGGGAAACAGATATAGTCTCTTCTGACAATGGGTTTAAAACACGGCCTATTGATAACATATTTAAATTTCATAAAGCTATTTGTAAAGACTTGGAGTTTATAGATGTTGAATCTGGAAAACTAAATGATTGTGATGAAACTTTCCTGAGGAAGTTCACTGGTAGGTTTCGCCTATTGTGGGGTTTGTATAGAGCTCATAGCAATGCAGAGGATGATATAGTATTTCCAGCGTTAGAATCAAAAGAAACTCTTCACAATGTGAGTCACTCCTACACTTTAGATCACAAGCAAGAGGAAAAGTTATTTGATGATATTTCAACTGGACTATCTGAGCTTACTCAATTATGTGAGTTTTTGACTAACAAGAATTTGTCTAACCATTTAACCAGCTGCTACGCTGATTATTCTGGTTGTTCTGATACCATACGAAAGTACAATGAGCTAGTTACAAAGATTCAGGGCATGTGTAAATCTATCAGAGTGACACTAGATCAACATATTTTCAGGGAGGAACTTGAATTATGGCCACTGTTTGATAGACATTTTTCTGTGGAAGAACAAGATAAAATTGTTGGTCGTATAATTGGTACCACTGGGGCAGAGGTTCTTCAATCAATGCTGCCATGGGTAACTTCAGCTCTGACACAAGAGGAGCAAAACAGAATGATGGACACATGGAAGCAGGCTACCAAAAACACAATGTTCAGTGAGTGGCTTAATGAATGGTGGGAAGGAAATGCTTCATTTTCAAATACAACTACTCCTATTGACCGTGTTTCACAAGGTGCGGATGCCTATGAAAATTTGGATCATAGCTTTGAAGCTTTCAGGCCTGGGTGGAAAGATATATTCAGGATGAACCAGAACGAACTAGAATCGGAAATTAGAAAAGTTTCTCGAGACTCAACTCTTGATCCAAGAAGAAAATCATATCTTATTCAAAATCTAATGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGCAAATGAACTTACAAATGGACAAGATTTACTTGAAAGATCACCTTCATTTCATGATCCAGAGAAAAAAGTCTTTGGTTGTGAGCATTATAAAAGAAACTGTAAACTCCTTGCTTCTTGCTGTGGAAAGCTATTCTCGTGCAGGTTCTGCCATGACAAAGTCAGTGACCATTCAATGGACAGGAAGGCTACAACTGAGATGATGTGCATGCACTGCCTGCAGTTACAGCCAATTGGACCAGTTTGTGCAATACCTTCTTGTGGTGGTTTGTCAATGGCAAAGTACTATTGTAGTATTTGCAAATTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAGGGACTTGGTGTTGATTCCTTCCATTGTATGCAGTGTAACTGTTGCCTGTCAATGAAATTAGTTGACCACAAGTGCCAGGAAAAAGGCCTAGAAACGAACTGCCCCATCTGCTATGATTATTTGTTCACATCCAGTACATCTGTCAGAGCTCTTCCTTGTGGCCATTTCATGCATTCTTCTTGCTTTCAGGCATATACATGTAGTCACTACACCTGTCCAATTTGTCGCAAATCTTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTCTATTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCGCCATCAGGATATACTTTGCAATGACTGCGGTAAGAAGGGGACTGCACGATTCCATTGGCTATACCACAAGTGTGGGCTTTGCGGATCTTATAACACAAGGGTAATTTAA 3840 0.4091 MLCCTLLCPHKEKKSSRKGGEKKQRERGKKAYRHKGSFIRFLEGLWFWKPESSSDHILRRRFSVMATPDGAVAVMSGTVSTVDSSPSKTCLKNSPLKSPILIFSFFHKAIRSELDGLHQAALDFASNQLAASDIKPLFERCLFLRTIYKHHCNAEDEVIFPALDMRVKNVAHTYFLEHEGEGLLFDQLFKLLNYNLLKEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSFEEQASLVWQFLCSLPVKIMAEFLPWLASDISSDEHNDMLRCLCSIIPEEKLLQQVVFGWMEGVKIRCRSCPNDKKDHCRNARTRDLTNCSERVHCACESSKTGKRKWLELSFDPTSSAISCPIDEILFWHKAIKQELIDLTEAARKIQLSGKFSDFSAFNGRLQFINEVCIFHSIAEDKVIFPAIDAELSFFHEHADEELQFDKLRCLTEGIQNGEANSRSTEDYMNLRFYAEQIMDSILKHFEKEEAQVLPLARKLFSPQRQRELLYGSLCLMPLKLIESVIPWLFGFLSEEEAKSFLQNMYMAAPPTDYALITLFSGWACKRNSKNNDGICAARRLLGTEITSPSFCICTPSFCPKKKSSSIQQDDADGSGSVKHGNSETREDNDVSHLIETRESLSLLGNQSCCVPGLGVNTGHLGVGSLIPAKSLRSLSDCSSAPSLNSSLFFWETDIVSSDNGFKTRPIDNIFKFHKAICKDLEFIDVESGKLNDCDETFLRKFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFDDISTGLSELTQLCEFLTNKNLSNHLTSCYADYSGCSDTIRKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNRMMDTWKQATKNTMFSEWLNEWWEGNASFSNTTTPIDRVSQGADAYENLDHSFEAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLMTSRWIASQQKSSQATANELTNGQDLLERSPSFHDPEKKVFGCEHYKRNCKLLASCCGKLFSCRFCHDKVSDHSMDRKATTEMMCMHCLQLQPIGPVCAIPSCGGLSMAKYYCSICKFFDDERTVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMKLVDHKCQEKGLETNCPICYDYLFTSSTSVRALPCGHFMHSSCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYRNRHQDILCNDCGKKGTARFHWLYHKCGLCGSYNTRVI 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0661 1279 MobiDBLite consensus disorder prediction 600 626 - -
Bisa11g0661 1279 Gene3D nmb1532 protein domain like 697 926 - -
Bisa11g0661 1279 ProSiteProfiles Zinc finger CHY-type profile. 1037 1106 IPR008913 GO:0008270
Bisa11g0661 1279 MobiDBLite consensus disorder prediction 600 614 - -
Bisa11g0661 1279 CDD Hr-like 102 230 - -
Bisa11g0661 1279 ProSiteProfiles Zinc finger CTCHY-type profile. 1109 1172 IPR017921 -
Bisa11g0661 1279 Pfam Ring finger domain 1172 1215 IPR001841 -
Bisa11g0661 1279 Gene3D nmb1532 protein domain like 95 250 - -
Bisa11g0661 1279 Gene3D nmb1532 protein domain like 361 506 - -
Bisa11g0661 1279 CDD RING-H2_Pirh2-like 1172 1215 - -
Bisa11g0661 1279 Pfam CHY zinc finger 1044 1119 IPR008913 GO:0008270
Bisa11g0661 1279 ProSiteProfiles Zinc finger RING-type profile. 1173 1215 IPR001841 -
Bisa11g0661 1279 FunFam Zinc finger protein BRUTUS 696 926 - -
Bisa11g0661 1279 SUPERFAMILY RING/U-box 1171 1218 - -
Bisa11g0661 1279 CDD Hr-like 362 490 - -
Bisa11g0661 1279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1168 1217 IPR013083 -
Bisa11g0661 1279 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 744 1279 - -
Bisa11g0661 1279 SMART ring_2 1173 1214 IPR001841 -
Bisa11g0661 1279 Pfam Hemerythrin HHE cation binding domain 107 232 IPR012312 -
Bisa11g0661 1279 Pfam Hemerythrin HHE cation binding domain 701 862 IPR012312 -
Bisa11g0661 1279 Pfam Hemerythrin HHE cation binding domain 360 492 IPR012312 -
Bisa11g0661 1279 FunFam Zinc finger protein-related isoform 1 1168 1217 - -
Bisa11g0661 1279 SUPERFAMILY CHY zinc finger-like 1036 1100 IPR037274 GO:0008270
Bisa11g0661 1279 Gene3D - 1243 1279 - -
Bisa11g0661 1279 CDD Hr-like 705 861 - -
Bisa11g0661 1279 Pfam Zinc-ribbon 1220 1277 IPR039512 -
Bisa11g0661 1279 SUPERFAMILY Zinc hairpin stack 1110 1165 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0661 Bisa-ChrBisa11 18636297 18646899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0661 65 1279 C2H2 Transcription Factor Family AT3G18290 61.040 0.0 1484