Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0629 ATGAATGCTTTCGATTCGAACGACTTCTTGAAATCGATAAAATGGAAACAGAGTCAACCTGTGAACGGCGGGATATATATTCATGATGAAATGGATAATAAGGACGCTTGCTCTCCCACCTCCAATGGCGGATTTGGCAACAACATCACCACCACCGGCCAAATGCAATCCAATGGCGCCGTTTTTGGTTACTCTACTTTGTTCTCTGACAAGCCGTCCCTCTCAGCCACCAGCAATGGCGGCCTCTCGCTTCACCCGTATGAAGGAAACTCTCCCTTGAAGTACAACGACTCAGCTATTCAGAGTCACGTGTACGACTCCTGCGTCATACAGAAGCACCAAGATATGGTGAACCGTCATAGTATGTGCCTAAATCGCCTTGCAGAGACTTCGAAGGAGGTCGAGGCTCTGCGGCACGAGAATACGCAACTCCGAGCTGTAAATAGGGAGCTAAACAAGCAATTGAACCTCCTTATTCAGGTTTCGGTCCAGAATCAATTAGATGGTTCCGCTGGTCATGCACAAGCACTTGATGTAGTGAATGGGTTTCGTGGCTTGCACATTGGGGACAATTTAGGAGACGGGAAAGAGAACTGTGCTGATTGGAATAAGGATCAGGAGGTTTCGGACGAGAGCCCAACAAGCGTGATTGAGAACACTGTTGAAGTAGAGAGGTTTTCGTTGCCAAAGAGCATATCTGTGAGATCAAATGGGTACTTGAAGGTGGTCCAGACTGCGGCCGGTGCCAGTAATGACAGTCGGACCAAGGGCTCTACGCGGCCTCGCTCGTCCTCGACTCCACCTGATGTCGTTCAAAAGGTATATGTACGTGGAGGGAAGAAGGAGGAGGAGCCTCTAGAGATGGTGGTGTATAACCAAGGCATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAGACTGGCACATGCCCTTACAAAGATCAGTGTCAATTTGCTCACGGTATTGGTGAGCTCCGCCCAGTCATCCGCCACCCACGTTACAAAACTGAGGTCTGTAGGATGGTCCTTGCTGGTGTTATATGCCCATATGGCCATAGGTGCCATTTCCGCCATGCACTCACCGAACAAGAGAAAGCCATAGCACAGCCCAAGCCCCGGGCAACGAACTTGCACAGATAA 1140 0.4974 MNAFDSNDFLKSIKWKQSQPVNGGIYIHDEMDNKDACSPTSNGGFGNNITTTGQMQSNGAVFGYSTLFSDKPSLSATSNGGLSLHPYEGNSPLKYNDSAIQSHVYDSCVIQKHQDMVNRHSMCLNRLAETSKEVEALRHENTQLRAVNRELNKQLNLLIQVSVQNQLDGSAGHAQALDVVNGFRGLHIGDNLGDGKENCADWNKDQEVSDESPTSVIENTVEVERFSLPKSISVRSNGYLKVVQTAAGASNDSRTKGSTRPRSSSTPPDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVICPYGHRCHFRHALTEQEKAIAQPKPRATNLHR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0629 379 MobiDBLite consensus disorder prediction 245 269 - -
Bisa11g0629 379 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Bisa11g0629 379 FunFam zinc finger CCCH domain-containing protein 15-like 289 328 - -
Bisa11g0629 379 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Bisa11g0629 379 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Bisa11g0629 379 PANTHER CCCH ZINC FINGER/TIS11-RELATED 113 367 IPR045877 GO:0003729
Bisa11g0629 379 SUPERFAMILY CCCH zinc finger 329 363 IPR036855 GO:0046872
Bisa11g0629 379 SUPERFAMILY CCCH zinc finger 292 327 IPR036855 GO:0046872
Bisa11g0629 379 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Bisa11g0629 379 Gene3D - 290 328 - -
Bisa11g0629 379 Gene3D - 329 365 - -
Bisa11g0629 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 321 IPR000571 GO:0046872
Bisa11g0629 379 FunFam Zinc finger protein 36, C3H1 type-like 1 329 365 - -
Bisa11g0629 379 Coils Coil 127 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0629 Bisa-ChrBisa11 17468089 17470290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0629 109 375 C3H Transcription Factor Family AT1G68200 55.797 5.83e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa11g0629 zf-CCCH 5.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g0629 11 17468089 17470290 Bisa11g0629 11 17468089 17470290 ECH