Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0628 ATGGATAATAAGGACGCTGGCTCTCCCACCTCCAATGGCGGATTTGGCAACAGCATCACCACCACCGGCCAAATGCAGTCAAATGGCACCGTTTTTGGTTCCCTCTACTCTTCTTTGTTCTCTGACAAGCCGTCCCTCTCAGCTAGCAGCAATGGCGGCCTCTCGCTTCACCCGTATGAAGGAAACTCTCTCTTATACGACTCCTGCGTCATACAGAAGCACCAAGATATGGTGAACAACCACAATATGTGCCTAAATCGCCTCGCCGAAACTTCGAAGGAGGTCGAGGCTCTGAGGCATGAGAACACTCAACTTCGGGCTGTGATTAGGGAGCTGAACAAGAAATTGAGCCCCTTCATTCAGGATTCGGTCCAGAATCAATTGAATGGTTCCTCTGGCAATTCGCAAGCGTTTGATGTTGTAAATGGGCTTCGTGGCTTGCACATTGGGGACAATTTCGGGGATGGGAAAGAGAACTGCGCTGATTCGAATAAGGATCAGGAAGTTTCGAACGAGAGCCCAACAAGCGTGATTGAGAACACTGTTGAAGTAGAGAGGTTCTCATTGCCCAAGAGCATATCTGTGAGGTCAAATGGGTACTTGAAGGTGGCTCAGAATGCCGCGGGTGCCAGTAATGGCAGTCGCCCCAAGGGTTCTACTCGGCCTCGCTCGTCCTCGACTCAACCGGATGTTGTTCAAAAGGTATATGTGCGTGGAGGGAAGGAGGAGGAAGAGCCTCTAGAGATGGTGGTATATAACCAAGGTATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAGACTGGCACTTGTCCTTATAAAGATCAGTGCCAGTTTGCTCACGGTATTGATGAGCTCCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGATCTGCAGGATGGTCCTTGCTGGCGTTGTATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAGGAGAAAGCCATAGCACAGCCTAAGATCAGGGCCTTGAACCTGCACAGATAA 1023 0.5054 MDNKDAGSPTSNGGFGNSITTTGQMQSNGTVFGSLYSSLFSDKPSLSASSNGGLSLHPYEGNSLLYDSCVIQKHQDMVNNHNMCLNRLAETSKEVEALRHENTQLRAVIRELNKKLSPFIQDSVQNQLNGSSGNSQAFDVVNGLRGLHIGDNFGDGKENCADSNKDQEVSNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAQNAAGASNGSRPKGSTRPRSSSTQPDVVQKVYVRGGKEEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIDELRPVIRHPRYKTEICRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKIRALNLHR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0628 340 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Bisa11g0628 340 SMART c3hfinal6 294 321 IPR000571 GO:0046872
Bisa11g0628 340 SUPERFAMILY CCCH zinc finger 290 324 IPR036855 GO:0046872
Bisa11g0628 340 Coils Coil 88 115 - -
Bisa11g0628 340 Gene3D - 290 326 - -
Bisa11g0628 340 Gene3D - 251 289 - -
Bisa11g0628 340 MobiDBLite consensus disorder prediction 1 22 - -
Bisa11g0628 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 328 IPR045877 GO:0003729
Bisa11g0628 340 MobiDBLite consensus disorder prediction 206 230 - -
Bisa11g0628 340 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Bisa11g0628 340 FunFam zinc finger CCCH domain-containing protein 15-like 250 289 - -
Bisa11g0628 340 SUPERFAMILY CCCH zinc finger 253 288 IPR036855 GO:0046872
Bisa11g0628 340 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Bisa11g0628 340 MobiDBLite consensus disorder prediction 157 177 - -
Bisa11g0628 340 FunFam Zinc finger protein 36, C3H1 type-like 1 290 326 - -
Bisa11g0628 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 257 282 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0628 Bisa-ChrBisa11 17437777 17439552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0628 65 329 C3H Transcription Factor Family AT1G68200 53.455 8.02e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa11g0628 zf-CCCH 4.5e-10 CL0537