Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0598 ATGGGCAGTGAGCCAGTGAAAGAAATTGACAGTGAGATCAAAATCAGAAAATGCCGTGTAGTCTTATTGAATTTCATTTTTGCATATCTTGCAACTGGTGCCTCCTTTTCTCACTCGTATCATCTGCAAGCAAAGTTCTATGAGCAACGAATACATTTGTGCAGTCAAGTTGAATACTTTGTAGCATCAAAACCCTCCGAAATTCTAATGGGATTCCCTCGTTACCATCGATCACATTTAAAGAGCGAAACTTTCCGTACCCTGGTTCGTATCCTATCCCACTACTGCGATGAGTCCCAGCTTTCCGGTGCCAATCAAGTTCAGGAGCTGACAACTCATAGTAATGGCACTGATAGAATGGCGCAAGAAAACCAGGAAAAGGAGTGTGAACACTTAAAAAATACTGGTACTTATTTTATGGATCCCAAGGATCCTGTAACTCAGAAAGAAACACAGGTTTTTGAGACGTTTGAAGGGTTTAGAGTCCAGGGCACAGAATATAAAGAGGAGTTTATGACGGGAGTAGAGGAAGATGGAGGCTCTTCTGGAAGACAGGATATGCTGATCTGTGAAAATGTTGATGTCATGCCCATGCGAGCTAATGGTTTGAATAAAGAACCGAAGCTAATAGATGAGTTAAATCAGATTGTGCAAGGAACTGAAAAACTTGTTTGTGACACTGATCTGACACCCTTGAACTTGGGATTAGTTGAGAAACAGAATGGAAGCAGTGTATTTAATTTGATGGATTACGAAGTAGAGTATGCTGAATTTAAACTATCTGATAGTAGCACATCTAGAACTGACATTGGATTACAGGCAGAAGGAGAATTTAATCAATGTGCTTTGGAAGGTTCTCGTGCATCTTCAATGACCAACTCTTCCACATCTGCCTGGGAACAAACCTCTGTACCAGTCAATATTAGTACATCAAGCATAAACCATGAGAGACAACAAAAGGAAATGGAATTGATGCAACCTGTTTATGCTGCAATGGTTTCTATTCCTACTACTGAAGAGAGTGAGTTTGAGAAGGAAGAGCAACATGGTCAGAAGGTTCTTGAAGCAATGCACTTTCCTGTAGATCAGTCTATGAACAGTGGAGCATTGAATTTGAGTGTAAAGCATGAGAGACAACAAAAGAAAATGGAATTGGTGAAACCTGATTGTGTTGCCACTGTTTCTCTTCCAACTACTGAAGAGGGTGAGCTTGAGAAGGTTAAACAACATGGTCAAAAGGTTCCTGAAGCAATGCACTCTGTAGATCAGGGTATGAATAATGAGGGGTTGGATTTAAGCATAAAGCATGGGAGACAACAAAAGGAAATGGAATTGATGAAGCCAGTTTGTGCTGCAAAGGTTTCTCTTCCTACTACTAAAGAGGGTGAGTGTGAGAAGGATGAACATGGTCGAAAGGTTCCTGAAACAATACACTTTTCTGTAGATCAGGGTAAGAATAGTGAAGCGTCGAATTTAGATGAATATGGTGGAGAGAAGATGTCATTACGGGACACTGATATTCTGGAAGCTAAACATGCTATGCAGTGTGAAGGAGTGCAACCAGAAAAAATAAGTTGTGCAAATGATGCAGCAATATTTTCCATTAATCAAAATAAGGAAGTAGACTTTGAAGAGGGAGAAATTTCAGGTGGCTTTAGAATAGCTGACAATTCATTACTGGACAGTGATATTCTGGAAGCTAAACATGCAATGCAGTGTGAACGAGAGCAGCCAGAAAAAATAACTTGTGCAAATGATGCAGCAATATTTTCCATTAATCAAAATAAGGAAGTAGACTTTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATAGCTGACAATTCATTTGATCTGTCTTCTGCAGATTCTTTGAAGTTACAACAGAGGAAAGATGAGGATCAGATGCCTGAAAATGTAGTTGAAAATACGGTATTTCATATTAATAAACAAAATGAAGAAAAAGAAGAAAATTATGAACCTACTTCCTTTATGGTTCATGCACCTCAAGATGCCTGTAACAGTGGACAAGCAGAACCTAGTACATGTAATAAAAATGGGTTTCCAAGTGGATTTGACGTAGGAACCTCTCAGGATGTTATTAATTATGAAGAAGTAGTTGAGCATGCTTGTGCGTTAGAGAGAGGAAAAAGTAAAGACAAAGAAAGTGGAATGAATGAGGCCGTTGACTCACCATTGACTTTGGCATCCAACCAAGTCTTGCACAGAGGTTTTTTGGAAGAAGCCACTAAAGATCATCAGAGCGAATCTGCAGTAAATCAGAAGGCAGGCGTCAACTGTAAGAAAAAGCGTGGTCCTGTCACTGCAGAAAAGAAAGCTAAAAAGAAGGAAAAGAAACGAAAGAAGCGTGCAGAAAATAACAGAAAACTGGGTGTTAAAAGGCTGAAGTTGCATCCAGTACAGAAACCAAAAACCGTCGCATATTGCCGCCATTATCTGAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTTTCACATGATGTAGTGCCTGAGACAAAATCCAAGCCTTGCTGTCACTTTGCACGTCACTCTTGCATGAAAGGGGATGATTGTCCATTTGATCATCAGCTCTCCAAATATCCTTGTAGCAATTTTGTGGCCCAAGGTTCTTGCAGCAGAGGTGATTCCTGTTTGTTTTCACACCAGCTGCCAACCAAGCAAGATATTCCTACATCTTCAAATGATAGCAGACCTAAGTTGAAGCCTCAACTCCTGTCAGGGAATACAAAATTGAGTAAGCCACTCAACATCAGTGGTAGTAGTGCTTCCCAGCAGAAACGTCTCTTTGATTCTAAGGGAACTCAATCTCACATCAATTCAGATCATAAGGTTGCAGACACTTTGCAGAAACCAACAGCCCCAGTACCAAAAGGAATTAGTTTTATGAATGTTTCAAAATCATCATCTCTCAATCCTAGTACTTCAAAACAAGACTTGGTGACTCCAAAAAAGAAAAGTGCTGTCCAAATTGGGACCCTTAAAGACCAAAGTGCTTCTGTCACAGCTCAAAAATTGGGGAATCCTATGAAAATGCCTGTGGTACCTAAAGGAATTAACTTTCTTTCATTTGGCAAAGGTCGTGTTTCCAATATCACAAGTTCTATCTGCTCCGTTTTGAATAGGGAAGGTGATATCAATTTTTCAAAAATAGACAGTCTTGGTTCACCTGAACAGGCAAGTTCATCTCTGTATAAGGATGTTTCCAGCAAAATTGGTGATTGCACCAAGCAAAGTGTACTGCATACTGCTCCACACGCAATTGAGATTTTAAAGAAAAATCAATCTGTAGACAAAGGAATGAATCTGGATTCTTCAGGAAAAGTTTCAATATATCATTCTGCTAATAATGCACAATGTAGCTTGACCTCTCATCAGGACTGTAGTCTTATTAGATCAGTGCAGGACGGCGTAAAGTCATATACTTCTAAGACTTCAACTGTGACCTCTTCTATGCTTCCAGATTCTCCATTTGTTTCTGGTCAATCTTCAGAATGCGTAGCATCTGGACATCATAAACACATATTTAACTCAGCCCAAAGGGCACTGTTATCAACTTTATCATTTGCAGCCGAGCATGAATCAGATATTAAGATGAAATGCTCTGCTGGTGCATCGGCTATGGGATCAGAGGTGAATAAGAATATCATTGAGGGGGAGATAACCAGAGGTTTGTTTAGTGCTGTCTTGTGCTGTGGTCCTTTGGCTGCACAATTTCGGAATTGTTGTTCCATTTTCCTTCCTTGCTGCAGCATTGCAGCAATGTTACACCATATGATCAGCTAA 3804 0.4001 MGSEPVKEIDSEIKIRKCRVVLLNFIFAYLATGASFSHSYHLQAKFYEQRIHLCSQVEYFVASKPSEILMGFPRYHRSHLKSETFRTLVRILSHYCDESQLSGANQVQELTTHSNGTDRMAQENQEKECEHLKNTGTYFMDPKDPVTQKETQVFETFEGFRVQGTEYKEEFMTGVEEDGGSSGRQDMLICENVDVMPMRANGLNKEPKLIDELNQIVQGTEKLVCDTDLTPLNLGLVEKQNGSSVFNLMDYEVEYAEFKLSDSSTSRTDIGLQAEGEFNQCALEGSRASSMTNSSTSAWEQTSVPVNISTSSINHERQQKEMELMQPVYAAMVSIPTTEESEFEKEEQHGQKVLEAMHFPVDQSMNSGALNLSVKHERQQKKMELVKPDCVATVSLPTTEEGELEKVKQHGQKVPEAMHSVDQGMNNEGLDLSIKHGRQQKEMELMKPVCAAKVSLPTTKEGECEKDEHGRKVPETIHFSVDQGKNSEASNLDEYGGEKMSLRDTDILEAKHAMQCEGVQPEKISCANDAAIFSINQNKEVDFEEGEISGGFRIADNSLLDSDILEAKHAMQCEREQPEKITCANDAAIFSINQNKEVDFEEGEISGDFRIADNSFDLSSADSLKLQQRKDEDQMPENVVENTVFHINKQNEEKEENYEPTSFMVHAPQDACNSGQAEPSTCNKNGFPSGFDVGTSQDVINYEEVVEHACALERGKSKDKESGMNEAVDSPLTLASNQVLHRGFLEEATKDHQSESAVNQKAGVNCKKKRGPVTAEKKAKKKEKKRKKRAENNRKLGVKRLKLHPVQKPKTVAYCRHYLKGRCHEGDKCKFSHDVVPETKSKPCCHFARHSCMKGDDCPFDHQLSKYPCSNFVAQGSCSRGDSCLFSHQLPTKQDIPTSSNDSRPKLKPQLLSGNTKLSKPLNISGSSASQQKRLFDSKGTQSHINSDHKVADTLQKPTAPVPKGISFMNVSKSSSLNPSTSKQDLVTPKKKSAVQIGTLKDQSASVTAQKLGNPMKMPVVPKGINFLSFGKGRVSNITSSICSVLNREGDINFSKIDSLGSPEQASSSLYKDVSSKIGDCTKQSVLHTAPHAIEILKKNQSVDKGMNLDSSGKVSIYHSANNAQCSLTSHQDCSLIRSVQDGVKSYTSKTSTVTSSMLPDSPFVSGQSSECVASGHHKHIFNSAQRALLSTLSFAAEHESDIKMKCSAGASAMGSEVNKNIIEGEITRGLFSAVLCCGPLAAQFRNCCSIFLPCCSIAAMLHHMIS 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0598 1267 MobiDBLite consensus disorder prediction 750 794 - -
Bisa11g0598 1267 SUPERFAMILY CCCH zinc finger 809 834 IPR036855 GO:0046872
Bisa11g0598 1267 MobiDBLite consensus disorder prediction 779 794 - -
Bisa11g0598 1267 MobiDBLite consensus disorder prediction 894 945 - -
Bisa11g0598 1267 MobiDBLite consensus disorder prediction 970 989 - -
Bisa11g0598 1267 Pfam CCCH-type zinc finger 815 834 IPR041367 -
Bisa11g0598 1267 Coils Coil 773 793 - -
Bisa11g0598 1267 SMART c3hfinal6 838 864 IPR000571 GO:0046872
Bisa11g0598 1267 SMART c3hfinal6 866 890 IPR000571 GO:0046872
Bisa11g0598 1267 SMART c3hfinal6 810 835 IPR000571 GO:0046872
Bisa11g0598 1267 SUPERFAMILY CCCH zinc finger 867 892 IPR036855 GO:0046872
Bisa11g0598 1267 MobiDBLite consensus disorder prediction 970 999 - -
Bisa11g0598 1267 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 868 888 IPR000571 GO:0046872
Bisa11g0598 1267 Gene3D - 802 867 - -
Bisa11g0598 1267 ProSiteProfiles Zinc finger C3H1-type profile. 809 836 IPR000571 GO:0046872
Bisa11g0598 1267 ProSiteProfiles Zinc finger C3H1-type profile. 838 862 IPR000571 GO:0046872
Bisa11g0598 1267 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 349 1219 IPR045124 GO:0003723|GO:0045892
Bisa11g0598 1267 ProSiteProfiles Zinc finger C3H1-type profile. 863 891 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0598 Bisa-ChrBisa11 16621856 16630524 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa11g0598 zf-CCCH 0.00032 CL0537