Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0555 ATGCCCGGCGGAATTGCCGGCGCTGGAGACCGTACGCCAGAGCTTCTAGGCCTGGTTCATGACATCGCCAGAATGTGCGGTAGTGCAGCTTGTGGTTCTTCCTCCGCCACCGCCATTGCTGCTGATGCTATGTTCAGGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACTTCTCTCCCATCTGTTCGAGGAAATTAAGGATTTGAAGGCTGTTGATTCTGCAGAGTCGGATGCTTCCACTTCTTCCACTGGCTCTGCCACTTCCTGGTCCTCTGATCTGGTGCTTGCTCTCCACTCTGCTAAGCGCCTTCTCTTCGTCGCTAGGAACTTCCGTTCCAATTGCACTTCTGATGGAGCTGCCAAGACAATTGTCTTCCAATTTCAGTGTGTGACTTGGAAATTAGAGAAACTATTGAGCAACTTACCATATGACCAATTGGACATCTCAGAGGAAGTTAGAGAACAGGTAGAGTTGGTGAGAACACAATTAAATCGAGCTGCAGAAAGATACGGGTCAATTATTTCAAATATATCATCTTATGACTTATCCCAGCCACTGGCTCAAAACATTAGTCGGGTTATTAGCAAATCTATGAAGGGATTGTATAAACAAAATAGCTGTCCTGAAAATTTATCTAAACTAGACAGCATTCCTAAAAGCAATGGATGGAGGAGTTGCAGCACAAATCGGGCTAGTCGTAACTTGGAAAGGGCAAAGAGCATCCCTGCCTTTTCTGAGGTTTCCACATTAAATGTCATACATCCTGAAAATCTAAATTCTGAGAGGAAGAGACCAATTGAATTTAAAAAACCTGAACCAATTATAATTCCTGAAGATTTTCTTTGCCCTATATCTTTGGAGCTAATGAGGGATCCTGTTATTGTGGCTACAGGTCAGACATATGAGCGGTCTTACATACAGAGATGGATAGATGGAGGAAATGCAACTTGTCCAAAAACTCAGCAGAAGCTACAAAATTTGACCCTAACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGATAACAACATTGAGCAGCCAACAGGACTAACCCACGGTAAGTTAAAAAGGAGTGATGGATCATTTAGAGATGTTACAGATGACATAGCAGCCATTGAAACTCTGGTGTGGAAGCTCTCAAGCCAGACTATTGAAGAGTGTAGAGCAGCTGTAACTGAAATCCGATCACTTTCAAAACGGAGCACGGACAACAGGATACTAATTACCGAAGCCGGTGCTATTCCAGTTCTGGTCAACCTTTTAACATCCGAAGACATATTGACACAAGAAAATGCAGTTACGTCAATTCTCAACCTCTCAATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCTATCCCATCCATTGTCCAAGTTCTCAGAGCTGGAAGCATGGAAGCGCGAGAAAATGCTGCAGCAACCCTCTTTAGCTTATCACTTGCAGATGAGAACAAAATAATAATTGGCTCCTCAGGAGCTATCCCTGCTTTGGTAGAATTGCTCCAAAATGGCAGCCCTAGAGGAAAGAAGGATGCAGCAACAGCGTTATTCAATTTATGCATTTATCAAGGGAACAAGGGTAGGGCCATAAGGGCAGGGATCATCACTGCGTTGTTAAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACTATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGATTGCCATAGTAAAGGCTGGCACCATACCTGTTTTGATTGATCTTTTGAGGACAGGTTTGCCTCGAAACAAAGAGAATACAGCCGCCATTTTACTGGCATTGTGTAAGAGAGATACTGACAATCTTACCTGTATAAGTAGACTCGGTGCTGTCATACCTTTGACTGAACTTGCTCGGAGTGGCACAGAGAGGGCTAAACGAAAGGCTACATCATTATTGGAACATCTTCGAAAGTTAGAGCAGCAGCTTTTGATGGTGTAG 1983 0.4352 MPGGIAGAGDRTPELLGLVHDIARMCGSAACGSSSATAIAADAMFRKDCIDLVRRISLLSHLFEEIKDLKAVDSAESDASTSSTGSATSWSSDLVLALHSAKRLLFVARNFRSNCTSDGAAKTIVFQFQCVTWKLEKLLSNLPYDQLDISEEVREQVELVRTQLNRAAERYGSIISNISSYDLSQPLAQNISRVISKSMKGLYKQNSCPENLSKLDSIPKSNGWRSCSTNRASRNLERAKSIPAFSEVSTLNVIHPENLNSERKRPIEFKKPEPIIIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNATCPKTQQKLQNLTLTPNYVLRSLITQWCIDNNIEQPTGLTHGKLKRSDGSFRDVTDDIAAIETLVWKLSSQTIEECRAAVTEIRSLSKRSTDNRILITEAGAIPVLVNLLTSEDILTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGSSGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKAGTIPVLIDLLRTGLPRNKENTAAILLALCKRDTDNLTCISRLGAVIPLTELARSGTERAKRKATSLLEHLRKLEQQLLMV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0555 660 Coils Coil 636 656 - -
Bisa11g0555 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Bisa11g0555 660 FunFam RING-type E3 ubiquitin transferase 360 453 - -
Bisa11g0555 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Bisa11g0555 660 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Bisa11g0555 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Bisa11g0555 660 FunFam RING-type E3 ubiquitin transferase 556 655 - -
Bisa11g0555 660 FunFam RING-type E3 ubiquitin transferase 454 554 - -
Bisa11g0555 660 Gene3D - 572 657 IPR011989 -
Bisa11g0555 660 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Bisa11g0555 660 Gene3D - 354 571 IPR011989 -
Bisa11g0555 660 PANTHER U BOX DOMAIN-CONTAINING 44 653 - -
Bisa11g0555 660 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Bisa11g0555 660 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Bisa11g0555 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Bisa11g0555 660 CDD RING-Ubox_PUB 278 330 IPR045210 -
Bisa11g0555 660 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Bisa11g0555 660 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Bisa11g0555 660 SUPERFAMILY RING/U-box 277 351 - -
Bisa11g0555 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Bisa11g0555 660 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Bisa11g0555 660 Coils Coil 150 170 - -
Bisa11g0555 660 SMART arm_5 406 446 IPR000225 GO:0005515
Bisa11g0555 660 SMART arm_5 570 610 IPR000225 GO:0005515
Bisa11g0555 660 SMART arm_5 488 528 IPR000225 GO:0005515
Bisa11g0555 660 SMART arm_5 612 652 IPR000225 GO:0005515
Bisa11g0555 660 SMART arm_5 529 569 IPR000225 GO:0005515
Bisa11g0555 660 SMART arm_5 447 487 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0555 Bisa-ChrBisa11 15181096 15184284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0555 43 652 U-box Gene Family AT1G23030 62.745 0.0 719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g0555 11 15181096 15184284 Bisa11g0555 11 15181096 15184284 ECH