LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g0500	ATGGAGAAATCCAACAGTTTTCTTCACAGTATCATGAAGCATTTGAAATTAGGCTCTAGTAAAGAGAGAAACAACGAAGAAGACTTTCAGAGAATCGCTGCACAAGAGCAGAAGATCTTTCCCTATGAAACCTTAGCCGCTGTTACAAAAAATTTTCACCCTCATCACAAGCTAGGGGAAGGAGGCTTTGGACCCGTTTATAAGGGGAAGCTAAACGATGGGAGAGAGATAGCAGTGAAGAAGCTATCAGTAAGGTCAAATCAAGGGAGGAAGGAGTTCATCAATGAGTGCAAGTTGTTGGCGCGTGTGCAGCACCGCAATGTGGTGAATCTATTAGGCTATTGCGCGCGTGGCTCCGACAAGCTGCTTATTTATGAGTACGTTCCTCATGAGAGCCTTGACAAGTTCTTATTCAAATCGCACAAGAGAGTGGAGCTTGACTGGAAAAAGAGGTTTGGGATAATTACAGGGATAGCGAGGGGATTGCTGTATCTGCATGAAGACTCACATAGTTGCATTATCCATAGAGACATCAAAGCCAGCAATATCTTGCTTGATGACAAATGGGCACCCAAGATCGCAGACTTCGGCCTGGCCCGTCTCTTCCCCGAAGATCAAACCCATGTCAATACTCGAGCTGCTGGAACCAATGGATATATGGCTCCAGAGTATGTGATGCACGGACATTTATCAGTGAAGGCAGATGTATTTAGCTATGGCGTTTTGGTGTTGGAGATTATAAGTGGTCAACGAAACTCATCGTTTAACTTGGACGTGGATGCACAGAACCTTATAGATTGGGCATACAAGCTTTACAAAAAAGGCCGGAGCTTAGAAATAATGGACACTTCATTAGCAGCTTCAGCAGTTCCTGAACAAGTAGTAATGTGCGTTCAACTAGGCCTACTATGTACTCAAGGCGACCCCCAACTCCGGCCCAGCATGCACCGGGTGGTGGTTCTGTTGTCGAAGAAGCCGGGGCACATAGAAGAACCGATGAGGCCGGGAGTGGCCAGTTCCAAATACGGCAAACATCACAGGCCATTTGCATCGTCTTCCACGGCCGGTAGTTCTAGTGAATCCGGTTCTCATACTTTTGTTTCGAGCAAAAACTACAGTACTAGTGCAACTGCTACTGTAACCGCAACCACAACAACAACTGCAACTACCTCGGCTACTAGAGAATCCGACCGGCATGGAAAGCGTCCGGTGTAA	1215	0.465	MEKSNSFLHSIMKHLKLGSSKERNNEEDFQRIAAQEQKIFPYETLAAVTKNFHPHHKLGEGGFGPVYKGKLNDGREIAVKKLSVRSNQGRKEFINECKLLARVQHRNVVNLLGYCARGSDKLLIYEYVPHESLDKFLFKSHKRVELDWKKRFGIITGIARGLLYLHEDSHSCIIHRDIKASNILLDDKWAPKIADFGLARLFPEDQTHVNTRAAGTNGYMAPEYVMHGHLSVKADVFSYGVLVLEIISGQRNSSFNLDVDAQNLIDWAYKLYKKGRSLEIMDTSLAASAVPEQVVMCVQLGLLCTQGDPQLRPSMHRVVVLLSKKPGHIEEPMRPGVASSKYGKHHRPFASSSTAGSSSESGSHTFVSSKNYSTSATATVTATTTTTATTSATRESDRHGKRPV	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g0500	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Bisa11g0500	404	ProSiteProfiles	Protein kinase domain profile.	52	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g0500	404	SUPERFAMILY	Protein kinase-like (PK-like)	37	332	IPR011009	-
	Bisa11g0500	404	Pfam	Protein tyrosine and serine/threonine kinase	55	320	IPR001245	GO:0004672\|GO:0006468
	Bisa11g0500	404	Gene3D	Transferase(Phosphotransferase) domain 1	128	331	-	-
	Bisa11g0500	404	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	22	379	-	-
	Bisa11g0500	404	MobiDBLite	consensus disorder prediction	330	404	-	-
	Bisa11g0500	404	CDD	STKc_IRAK	58	324	-	-
	Bisa11g0500	404	Gene3D	Phosphorylase Kinase; domain 1	13	127	-	-
	Bisa11g0500	404	SMART	serkin_6	52	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g0500	404	FunFam	Cysteine-rich receptor-like protein kinase 10	129	334	-	-
	Bisa11g0500	404	MobiDBLite	consensus disorder prediction	346	393	-	-
	Bisa11g0500	404	FunFam	Cysteine-rich receptor-like protein kinase 10	16	127	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g0500	Bisa-ChrBisa11	11913876	11923405	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g0500	40	340	Receptor kinase-like Gene Family	AT4G11530	50.825	2.05e-107	329

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa11g0500		PK_Tyr_Ser-Thr	1.6e-49	CL0016