Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0413 ATGGGCAAGTCCAGTAAGAAATCAGCTCCCAAAGTTGATGCTGCTCCGGCTGTTGTTCCGCTTTCCAAGTCTGCCAAGAAAGGCAAGAGGGAAGCTGAGGGTGAACTTGAGAAGCAAGTGAGTGTAAAGAAGCAGAAGAGAAATGAGGTTGCTGAGAAGAAGAAAGCAAAAGTGCCAAAAAATAAGAAGGAAAGTAGTTCAGATGATTCCTCGTCAGATTCTGAGCAAGATAAGAAAACTGCTCCAAAAGTTGTTATTCCTTCAAAGACGCGACCTGTTAAGAATGGTACTCTAAATACTCGGGCAAACAAAGGCAAGCTAGCAAGTAGTTCCAGTTCTTCTGATTCTTCAGACGATGATTCTGATGATAGTGATGCTGGAAAATCCAAGGTGGTCTCCGCTGGTGTTAAGAATGGAACTGTTGCTACAAAGAAGAAAGTTGAGTCAGATAGTGAAACTTCGGACACAGAATCTGACAGCAGCTCTGATGAGGATAATGTAACTAAATCATCCAAAAAGTTGCCTTCTGCCAGTAAGAGTATACCTGCCAAAAAGATTGAGTCAAGTGATGAGACATCCTCTGATAGTAGTTCAGATGAAGATGATGTACCTGTGGCAGCAAAGAAATTGCCTGCTTCAGCTGTTGCTTCAAAGAAGAAAGTTCAGAGCAGTGACAGCTCAGATAATGAATCAAGTGAAAGCTCCGATGAAGATAATGTTATAAAGCATACTGCCTCTGCTGTGTCCAAGCCTTCTGCTCCACCAAAGAAGGTTGAATCAAGTGACAGTTCAGATTCTGATAGCAGTAGCTCCGATGAAGATAACAAAAATAAAACTGAACCTAAGGCTAATATTAAAGCAGCGGCTGGTGTGAAGACAGCTAAAAAGGAATCTAGTGAAAGTTCATCTGAAGATGAGTCTTCAGAAGATGAGAAACCTGCTCCCAAGGCTAATGTTAAAGCTGCAGATGGTGTGAAGACAGCTAAAAAGGAGTCTAGTGAAAGTTCATCTGAAGATGATGACTCTTCAGAAGATGAGAAACCTGTTCCCAAGGTCAATGTTAAAGCAGCTAATGCTGTGAAGACAGCTAAAAAGGAGTCTAGTGAAAGCTCATCTGAAGATGACTCGTCAGAAGATGAGAAACCTGCTCCCAAGGCCAATGTTAAAGCGGCTAATGCTGTGAAGACAGCTAAAAAGGAGTCTAGTGAAAGCTCATCTGAAGATGACTCTTCAGAAGATGAGGGTAAAATGGATATTGATGAAGATAGTAGTTCTGAAGATTCTGATGTAGAGCCACAAAAGAAGGTCAAGGCCTTGCCTCGGAAGACTTCAAAGGAAAGCAGTGATAGCTCAGAGAGTTCTGAGGACAGTGAAGAGGAGAATGAGAGGCCTTTCAAGACTCCTAAGAAAAAAGCTGAGGATGTGGAGATGGTTGATGCTGTTTCAAGGAAGTCAAATGGAAAGAAAGCTCCTAAAACCCCAGCTACCCCGGAAGTACAAAATGCAACATCAAAGACACTATTTATGGGAAACTTATCATTTAAAATAGAGCGGGCTGATTTGGAAAATTTCTTCAATGATTGTGGAGAGATTGTTGATGTGCGTTTTGCCTCAGATGATAGTGGGAAATTTAAAGGCTTTGGACATATTGAATTTGCCACCGCAGAAGCAGCTCAAAATGCCCTTGAGTTGAATGGCAATGAATTGTTGTCTCGTCCTGTCAAACTTGATTTAGCTCGTGAAAGGGGGGCATATACTCCAAATAGCGGCAACTTGAGGGACTCATTCCAGAAGGGTGGACATGCTCAATCTTACACAATATTTGTCAAGGGTCTTGATACATCCCAAGGAGTCGACGAGATTAGAACAAACCTGCAAGAGCATTTCAGTTTTGGAGATATTAAAAGGATATCGATTCCAAAAGATTATGACTCTGGTTCTGTTAAGGGGTTTGCCTATATGGACTTCAAGGATGAGGATGACTTCAACAAAGCTCTAGAAATGAATGGAAGTGAGCTTGGAGGTTATCCCTTGACAGTTGAGGAAGCAAAACCTCGATCTGATAATCAAGGTGCAAGTGGTGGTAGAGGAGGCGGAAGGAGTGGAGGTAGAGGAGGCGGCGGTGGAAGAAGTTGGGGTAGAGATGGTGGTGGTCGATTTGGTGGAAGGAGTTGGGGTAGAGATGGTGGCGATCAATTTGGTGGAAGGCGTGGAGGAGGCAGAGGTGGTCGTGGAAGAGGTGGTGGCGGCGGCAGGGGTCGTGGTACACCATATAATAAGCCAAGCCTGGCTGCTGAAGGCACAGGGACAAAGACAACTTTTGCTGATGAGGATTAG 2337 0.4352 MGKSSKKSAPKVDAAPAVVPLSKSAKKGKREAEGELEKQVSVKKQKRNEVAEKKKAKVPKNKKESSSDDSSSDSEQDKKTAPKVVIPSKTRPVKNGTLNTRANKGKLASSSSSSDSSDDDSDDSDAGKSKVVSAGVKNGTVATKKKVESDSETSDTESDSSSDEDNVTKSSKKLPSASKSIPAKKIESSDETSSDSSSDEDDVPVAAKKLPASAVASKKKVQSSDSSDNESSESSDEDNVIKHTASAVSKPSAPPKKVESSDSSDSDSSSSDEDNKNKTEPKANIKAAAGVKTAKKESSESSSEDESSEDEKPAPKANVKAADGVKTAKKESSESSSEDDDSSEDEKPVPKVNVKAANAVKTAKKESSESSSEDDSSEDEKPAPKANVKAANAVKTAKKESSESSSEDDSSEDEGKMDIDEDSSSEDSDVEPQKKVKALPRKTSKESSDSSESSEDSEEENERPFKTPKKKAEDVEMVDAVSRKSNGKKAPKTPATPEVQNATSKTLFMGNLSFKIERADLENFFNDCGEIVDVRFASDDSGKFKGFGHIEFATAEAAQNALELNGNELLSRPVKLDLARERGAYTPNSGNLRDSFQKGGHAQSYTIFVKGLDTSQGVDEIRTNLQEHFSFGDIKRISIPKDYDSGSVKGFAYMDFKDEDDFNKALEMNGSELGGYPLTVEEAKPRSDNQGASGGRGGGRSGGRGGGGGRSWGRDGGGRFGGRSWGRDGGDQFGGRRGGGRGGRGRGGGGGRGRGTPYNKPSLAAEGTGTKTTFADED 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0413 778 SUPERFAMILY RNA-binding domain, RBD 495 598 IPR035979 GO:0003676
Bisa11g0413 778 MobiDBLite consensus disorder prediction 92 115 - -
Bisa11g0413 778 SUPERFAMILY RNA-binding domain, RBD 602 717 IPR035979 GO:0003676
Bisa11g0413 778 Coils Coil 29 49 - -
Bisa11g0413 778 MobiDBLite consensus disorder prediction 24 84 - -
Bisa11g0413 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 607 678 IPR000504 GO:0003723
Bisa11g0413 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 574 IPR000504 GO:0003723
Bisa11g0413 778 Gene3D - 589 724 IPR012677 -
Bisa11g0413 778 MobiDBLite consensus disorder prediction 681 778 - -
Bisa11g0413 778 MobiDBLite consensus disorder prediction 297 336 - -
Bisa11g0413 778 SMART rrm1_1 606 681 IPR000504 GO:0003723
Bisa11g0413 778 SMART rrm1_1 506 577 IPR000504 GO:0003723
Bisa11g0413 778 MobiDBLite consensus disorder prediction 428 451 - -
Bisa11g0413 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 581 IPR000504 GO:0003723
Bisa11g0413 778 MobiDBLite consensus disorder prediction 1 498 - -
Bisa11g0413 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 605 685 IPR000504 GO:0003723
Bisa11g0413 778 MobiDBLite consensus disorder prediction 406 427 - -
Bisa11g0413 778 MobiDBLite consensus disorder prediction 366 385 - -
Bisa11g0413 778 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 605 732 - -
Bisa11g0413 778 Gene3D - 440 588 IPR012677 -
Bisa11g0413 778 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0413 Bisa-ChrBisa11 7791878 7799156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0413 465 673 Eukaryotic Initiation Factors Gene Family AT4G34110 27.230 6.92e-11 63.9