Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0357 ATGGGTCGTGGAAAGATTGAGATCAAGAGGATTGAGAACACCACCACAAGGCAAGTGACCTTCTCAAAACGCAGAGCTGGCCTTGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGATGCCCAAATTGGCCTCATCATCTTCTCAAGCACCGGCAAGTTGTTTCAGTATTGCACTGATCCTTTCAGATTGGAGCAGATCATCGAAAGATATCAGAGAGCTACAGGAGCTCGCATACCTGAGCACGATAGCCGGGAAGACTTATTCAATGAAATGGCAATGCTGAGGCAGGAGACTCTCCGACTTGAACTAGGAATCCAGAGGTATGTTGGAGAGGGCATGAGTTCTTTGGAGTTCGAGGAAATTACTAAAATTGAACAAGAACTTGAGGCCTCTGCCACCAAGGTCCGAAACCGAAAGAATGAACTGTTGCAACAACAGCTGGATAATCTGCGAAGAAAGGAGAGAATCATGGAAGAGGAAAACAACAACTTGTCCCATTGGGCAGTGGAAGGGAAGGGAGTGGAGCATGATGAACAGCAAATGATAGAGCAGTTGCGATTCTATGAAGAGCAGCAAGGTCCCCATGGCGATGGTGGTAGCATCCTTCAACTTGCTCCAGCTCTTCACCTTCACCCTCATCTCCACCCCTATCTTCAGCTCGCCCAACCCAATATTCAGGATCACCACCACCTTCCCCAACAATGATGCTTAATTGTGATGAGGATCCGGATAATCAAATATTGCTGCTGCCTTTCTCTGTTCTGTGGTGGTTTCGGTCGACGTGATCGTTGCTTTGCCGGTGTCCAGGTGTTTAATTTGCTGGCGTTCTGTCCTAGTGGCTCTGGGAGTTTTTGGTTACTGGTGGAGTCCTTCTGCCTAGAGGATTGTGGAGAAAAAGAACAAGAGGAAAATGGAGATTATGCAGAATTATCCTTTGGATCATGGTTAAGAGCTAGCCCTTTGAGAGGAAGACAAAATGAAGCTAGAGATGATAAAAAGAATTTAAACAGCCGTAAAATGATTTTCAAACCAGCTCACAGTGGAAGGATGCATAATGATGACAATGAAGATTTTAAAGCAAGACCAGATAGCAATCAGGGAAAACAAAAGAGGGATCAAACGAAAATCCTTGCAGCTATGCTTGAATCCTTGTCAGGCTGTCATATATCCCCAAGGAAGATGGAGGAAAGAACAATCAATGATAGCCAATGGAATTCTCTACAGGAAAATAGTATTTTAATATCGCAGACAGAAGGTTGCCCAAAGGATACTGTGTACAGCAAAGAAAATGAATCACTTGTAGACAAGGAAAGAAATATGGTGAGTAATACGGTAGATGGAGAGCAAAAGTTGGAGAATATCACTACTAGTACTACTGCTTCAGATTCTAATTCTAGAAGAGGTAAGTGGAAAAGGCTTAAAAGGGGTTTGGAATTGAGGGAAGAATCTTATGATCTTATCAGTATGGAACCAGTGGCAGAAATGAATAATCATCACTATAGTAGTATTTAA 1515 0.433 MGRGKIEIKRIENTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKLFQYCTDPFRLEQIIERYQRATGARIPEHDSREDLFNEMAMLRQETLRLELGIQRYVGEGMSSLEFEEITKIEQELEASATKVRNRKNELLQQQLDNLRRKERIMEEENNNLSHWAVEGKGVEHDEQQMIEQLRFYEEQQGPHGDGGSILQLAPALHLHPHLHPYLQLAQPNIQDHHHLPQQXCLIVMRIRIIKYCCCLSLFCGGFGRRDRCFAGVQVFNLLAFCPSGSGSFWLLVESFCLEDCGEKEQEENGDYAELSFGSWLRASPLRGRQNEARDDKKNLNSRKMIFKPAHSGRMHNDDNEDFKARPDSNQGKQKRDQTKILAAMLESLSGCHISPRKMEERTINDSQWNSLQENSILISQTEGCPKDTVYSKENESLVDKERNMVSNTVDGEQKLENITTSTTASDSNSRRGKWKRLKRGLELREESYDLISMEPVAEMNNHHYSSI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0357 504 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Bisa11g0357 504 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 ProSiteProfiles K-box domain profile. 85 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa11g0357 504 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Bisa11g0357 504 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa11g0357 504 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa11g0357 504 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 MobiDBLite consensus disorder prediction 327 374 - -
Bisa11g0357 504 Coils Coil 122 164 - -
Bisa11g0357 504 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa11g0357 504 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bisa11g0357 504 MobiDBLite consensus disorder prediction 347 371 - -
Bisa11g0357 504 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0357 Bisa-ChrBisa11 4613854 4623099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0357 1 228 MADS-box Gene Family AT5G23260 48.387 6.88e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa11g0357 K-box 1.3e-18 No_clan