Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g0353 ATGGGTGGGGATGGAAATGACGAAAGAGGAAGTTGTCTGGTTGCAGGCCATAAGATACGAAATAAGAGAAGGAGAGATAAGGAGAGAAGAGAGGAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGATAACTAGATTTCGGAAGAATATGTCTGCTGCTTCCTCATCCACACAGTTTTTCGGAATCAGAGAGGAAAACCCAATTCCGATGACACAACAACAATCCTCTACCGCTGCTTCCTCAACCTCAGTGCCTCAAAAGAAAAGGAGGAATCAACCCGGAACTCCAAATCCAGATGCCGAGGTGATAGCTCTATCTCCCAAGACCCTAATGACAACAAACAGGTTCATCTGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTGAAGCAGAAGAGTACGAAGGAGCCAAAGAGAAAGGTGTATCTTTGTCCAGAGCCCACGTGCGTGCACCATGACCCTTCCAGGGCTCTCGGCGACCTCACCGGTATCAAGAAGCACTACTCTCGCAAACACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAGTACGCAGTTCAGTCCGATTGGAAGGCACATTCCAAGACTTGCGGTACCAGAGAATACAGATGCGACTGTGGCACTCTCTTCTCCAGACGTGATAGTTTCATCACACACAGAGCATTTTGTGATGCGTTGGCGCAGGAGAGTGCAAGGCACCCCACAACCCTAAATTCTATGGGGGCTCATCTTTATGGCACAAACCACCACATGAGCTTAGGCCTATCCCAGCAAGTGGGTTCACCACTTTCCCAACTTCACCATCAAAACCACAACACTACTAACCCTAGCATGTTGCGTCTTGGCAGTGCTGGTGCTGCAAAATTTGAGCACCTAATCCCACCTTCAAACACCAATTCCTCGGCTTTCATCATAACCGATCCGATTCCGAACCAAGGATTTCATCATCAAGATCATCATCAATCACAGCAAGGAGGACCATTATTCTCATCAAGCAAGCCCTCATCCATACATGGCCTTATGCAGCTTCCTGATCTTCAAGGCAACCCCATTAACAACAACCCTAATTCTTCTTGTTCCAATCTGTTTAACCTTGGCTTCTTTCCAAATAGTAGCAACAACAACAATGGCAGCATAATCACCGATCAATTTGACAATGTGAGTTGTGGTGGCGGTGGTTACTCTAGCAACCCTATCGGTGATCAAGTTGGATCACTCTTCAGCAATTCAATGCCACACGAAAATGCGTCGGCCACGATGCCACATATTTCGGCCACAGCATTGCTTCAAAAAGCGGCTCAAATGGGTTCGACCACAACCACGACGTCCAACAACAGCACTACTTCCTCGTTACTAAGAGGAACCATTAATGGTGCTAAAGCCGATCATAATCTGGTCACTTTTGGACATGATGGTACAGAGAAAGTTAATGTTAACAACCATCACCAACATCTCCAAGGATTGATGAACTCTCTAGCGAACGGCAATGCTTCTATATTTAGCAATGTGCAACAAGGGAATGATCAGTCCAATTTGCAACAAAATCTGGGTGTGAGCTTTGGAGGGTCTGATAAATTGACGTTGGACTTCTTGGGTGTTGGAGGAATAGTGAGAAACATCAATGGTGGATTTTCACAGAGAGAGCCACAACAACATGGCATTAATATGAGCTCCTTGGATCCAGAACATCAGGCAAGCCAACCTTTCAGAAGTACAACGCTGCAATAA 1782 0.4607 MGGDGNDERGSCLVAGHKIRNKRRRDKERREEKKKKKKKKKKKITRFRKNMSAASSSTQFFGIREENPIPMTQQQSSTAASSTSVPQKKRRNQPGTPNPDAEVIALSPKTLMTTNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTTLNSMGAHLYGTNHHMSLGLSQQVGSPLSQLHHQNHNTTNPSMLRLGSAGAAKFEHLIPPSNTNSSAFIITDPIPNQGFHHQDHHQSQQGGPLFSSSKPSSIHGLMQLPDLQGNPINNNPNSSCSNLFNLGFFPNSSNNNNGSIITDQFDNVSCGGGGYSSNPIGDQVGSLFSNSMPHENASATMPHISATALLQKAAQMGSTTTTTSNNSTTSSLLRGTINGAKADHNLVTFGHDGTEKVNVNNHHQHLQGLMNSLANGNASIFSNVQQGNDQSNLQQNLGVSFGGSDKLTLDFLGVGGIVRNINGGFSQREPQQHGINMSSLDPEHQASQPFRSTTLQ 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g0353 593 MobiDBLite consensus disorder prediction 329 361 - -
Bisa11g0353 593 Gene3D Classic Zinc Finger 171 250 - -
Bisa11g0353 593 Coils Coil 23 50 - -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 49 94 - -
Bisa11g0353 593 FunFam protein indeterminate-domain 5, chloroplastic-like 171 250 - -
Bisa11g0353 593 Pfam Zinc-finger double-stranded RNA-binding 117 139 IPR022755 -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 561 593 - -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 16 48 - -
Bisa11g0353 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 139 IPR013087 -
Bisa11g0353 593 SUPERFAMILY beta-beta-alpha zinc fingers 116 213 IPR036236 -
Bisa11g0353 593 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Bisa11g0353 593 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 70 568 IPR031140 -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 1 102 - -
Bisa11g0353 593 Gene3D Classic Zinc Finger 96 165 - -
Bisa11g0353 593 FunFam protein indeterminate-domain 12-like 96 164 - -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 560 593 - -
Bisa11g0353 593 SMART c2h2final6 117 139 IPR013087 -
Bisa11g0353 593 SMART c2h2final6 158 188 IPR013087 -
Bisa11g0353 593 SMART c2h2final6 193 213 IPR013087 -
Bisa11g0353 593 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g0353 Bisa-ChrBisa11 4467408 4472959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g0353 87 560 IDZ Gene Family AT2G02070 50.760 7.66e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa11g0353 zf-C2H2_jaz 3.6e-05 CL0361