Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa11g0258 | ATGGAAGAACCATCGAAGGAGGAAGAAGGCGCAGAAAGGGCTAGGTGCACTGAAAATGACCTAGAAGACGAGAAGGTTGTATCATTGGAAGGTATGAATCGGAGGGAGAAGAGGAAGGCCATCAAGAAACTGAAGCGGAAGCAAATGAGGAAGGAGATGGCGGCGAGGGAGCGCGAGGAGGAGGAGGCTCGGCTCAACGATACCGAGGAGCAAAGAAGGCTAATGCTGTTGGTGCAGGAAGAGGCCGAAAGGGTTGAAAGGGAAAGGAAGCTTTTCGAGGAGAGAGAGAGGGCGTGGATCGAGGCTATGGAGAAGAAGATGAAACATGCTGCGGAAGAAGAGCAGAGGAAGCTTCTCGAAGAAACTTATAAGCAACAGCAAGATAAGGAGAACGCGTTTAATCAGGATGATGAATGGGAATACGTGGAGGAAGGACATGCAGAGATTATTTGGCAAGGAAATGAGATCATCTTTAGAAAGAAAAAAGTGAGAATCACAAAGAAGGATTCAGGCCATCAGATTAAAAAAGAGGACACTGATAGACCTACATCAAATCCTCTGCCTCCAAAATCTGAAGTTTTTGCTGATCACACAAATTCATCAGTAGCTTCTGCACAACAGGTTCTTGAGAGTGTTGCACAACAAGTACCAAATTTTGGAACTGAACAGGATAAAGCTCATTGTCCCTTTCATTTAAAAACTGGAGCATGTCGATTTGGTCTACGTTGTAGCAGGGTCCATTTTTACCCTGATAAATCTTGTACTCTTCTTATGAAGAACATGTACAGTGGTCCTGGCCTTGCTTGGGATCAAGATGAGGGGCTTGAGTATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAATTTTATGAGGATGTCCACACAGAGTTCCTGAAGTTCGGAGAAATTGTGAACTTTAAGGTGTGTAAAAATGGTTCATTTCATTTGAGAGGAAATGTCTATGTACAGTATAAATCAATGGATTCTGCTCTGCTTGCTTATAACTTGATCAATGGTCGCTACTTTGCTGGCAAACAGGTTAGGATTGAATTTGTCAATTTGACCAGATGGAAGGTGGCCATTTGTGGAGAATATATGAAGTCAGGGTTCAAGACTTGTTCACATGGATCAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGAGGAGATTATGAATGGGCTGACTCTGACAAACCACCCCCAAGATATTGGTTGAAAAAGATGGCTGCTTTATTTGGTTGTTCTGATGATCATGAGAAATTGACGGATCAAGAATCTTTGGGTGTCTTGAAGAACTCTAGCAAAACACAAAAAACAGATGCGGACAGAAGATCAAGATCAAAATCAAGATCAAGGGATATGGGTGGGTTTGGTAGCAGTGGTTCTGATAGAAGAAGGCGTGAAGAAGAAGGAAAGCAAAGTAGAAGTGCGGACAAGGAAATGTATGAACAAAATATCATCTTGAAAGACAACCATAAAAGAAAAGGCAGAACTTCGGATACTGTCTCTGATAGGGAATGGTTGGATAAGGAGGGTGATATGGGAAAATGCCATAAACGCATTGGAAAAAGCTCAATTAATAGGAATGAGGGTGATGAGAGAAGAAGTCATGAAGAGGGTTCTGATGTGGATTTGGATGCTGTACCTGGGTACAGAATAAAACAGCACAACCGGGAAGGAAGGAACTTAAGACAAAGGAATGGGGATAATGATGAGGCTGGACCAAGAAATTGGTCAGATAGGGATAAAGATAGTAAGAGACGACTTGAAAGAAAAAGCTCTAGACATTCGAGAAGGGACTACGAATATGTAACTAGTGACACTGAACCTGACAGTTTGTTTGATAGAGATGGAGACAAGGAAACACAACATGGTTGCTCTAGGAAAAGCTCAAAGCACCGAGGAAGATCTGGTTTTCAGGATGATTGCTCAGACTCAGAACGAAAATGA | 1953 | 0.425 | MEEPSKEEEGAERARCTENDLEDEKVVSLEGMNRREKRKAIKKLKRKQMRKEMAAREREEEEARLNDTEEQRRLMLLVQEEAERVERERKLFEERERAWIEAMEKKMKHAAEEEQRKLLEETYKQQQDKENAFNQDDEWEYVEEGHAEIIWQGNEIIFRKKKVRITKKDSGHQIKKEDTDRPTSNPLPPKSEVFADHTNSSVASAQQVLESVAQQVPNFGTEQDKAHCPFHLKTGACRFGLRCSRVHFYPDKSCTLLMKNMYSGPGLAWDQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKSMDSALLAYNLINGRYFAGKQVRIEFVNLTRWKVAICGEYMKSGFKTCSHGSACNFIHCFRNPGGDYEWADSDKPPPRYWLKKMAALFGCSDDHEKLTDQESLGVLKNSSKTQKTDADRRSRSKSRSRDMGGFGSSGSDRRRREEEGKQSRSADKEMYEQNIILKDNHKRKGRTSDTVSDREWLDKEGDMGKCHKRIGKSSINRNEGDERRSHEEGSDVDLDAVPGYRIKQHNREGRNLRQRNGDNDEAGPRNWSDRDKDSKRRLERKSSRHSRRDYEYVTSDTEPDSLFDRDGDKETQHGCSRKSSKHRGRSGFQDDCSDSERK | 650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa11g0258 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 354 | IPR000504 | GO:0003723 | |
| Bisa11g0258 | 650 | Coils | Coil | 100 | 129 | - | - | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 437 | 452 | - | - | |
| Bisa11g0258 | 650 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 354 | IPR035979 | GO:0003676 | |
| Bisa11g0258 | 650 | PANTHER | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT | 208 | 587 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | CDD | RRM_U2AFBPL | 255 | 353 | - | - | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 426 | 650 | - | - | |
| Bisa11g0258 | 650 | ProSiteProfiles | Zinc finger C3H1-type profile. | 356 | 386 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 50 | 68 | - | - | |
| Bisa11g0258 | 650 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 227 | 247 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 357 | 384 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | Gene3D | - | 253 | 352 | IPR012677 | - | |
| Bisa11g0258 | 650 | SMART | rrm2_1 | 267 | 350 | IPR003954 | GO:0003676 | |
| Bisa11g0258 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 347 | IPR000504 | GO:0003723 | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 168 | 194 | - | - | |
| Bisa11g0258 | 650 | Coils | Coil | 41 | 95 | - | - | |
| Bisa11g0258 | 650 | SMART | rrm1_1 | 255 | 350 | IPR000504 | GO:0003723 | |
| Bisa11g0258 | 650 | ProSiteProfiles | Zinc finger C3H1-type profile. | 222 | 250 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 38 | 68 | - | - | |
| Bisa11g0258 | 650 | MobiDBLite | consensus disorder prediction | 460 | 650 | - | - | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 311 | 333 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 228 | 247 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 247 | 267 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 376 | 388 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 283 | 298 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | PRINTS | U2 auxiliary factor small subunit signature | 338 | 362 | IPR009145 | GO:0000398|GO:0003723|GO:0089701 | |
| Bisa11g0258 | 650 | SMART | c3hfinal6 | 223 | 249 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | SMART | c3hfinal6 | 356 | 385 | IPR000571 | GO:0046872 | |
| Bisa11g0258 | 650 | FunFam | Zinc finger CCCH domain-containing protein 5 | 255 | 352 | - | - |
Transcription factors information