Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g2038 ATGGATGGTATTCATGGGAGTGATTCTCAGATACACATGAGTGATGCTCAACATTCTGTGCATGTTCCATATGTGCCAGAACATGAACATGGATTGGACCATATGAGCGATGGTAATGGGATGGATGAAGACCATAATAATTGTGGTGATACTAATGCTGGTGGACGTGAGAATGTAGAAGGAGAAGTATCCAACCCTGGAAATCTTACTGACAACCAAACTGCAATTATAGAGTCAGGGAGTGATGGAGGGGACCAACTCACACTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCCCCTGAAAAGGTTCAAGCTGTGCTATTACTATTGGGGGGCCGTGAGATACCTTCCATGCCTGCTGTCCCAATAACTCCTTACCATAATGATCGGGGAATTTCTGGGACTCCCCTAAAACTCAGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGTGAAAAGCGGAAAGAACGGAATTTTGACAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACATCTTCCAAGTCCAACACTGATGAATCTGCACCAGGTGCAACAAATTGGGGGACAAATGAAAGCTGGACGTCAGACAATATAGGATCCCAACACCAGGATATTGTCTGTAGGCACTGTGGCATCAGCGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTAACGAAAGCTCCCTTACCTGGACAGAATTCTTCATTAAACAAGAATGAGAATAAAAGTTGA 849 0.4382 MDGIHGSDSQIHMSDAQHSVHVPYVPEHEHGLDHMSDGNGMDEDHNNCGDTNAGGRENVEGEVSNPGNLTDNQTAIIESGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPSMPAVPITPYHNDRGISGTPLKLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNTDESAPGATNWGTNESWTSDNIGSQHQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKAPLPGQNSSLNKNENKS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g2038 282 MobiDBLite consensus disorder prediction 266 282 - -
Bisa10g2038 282 Gene3D - 214 280 IPR013088 GO:0006355|GO:0008270
Bisa10g2038 282 ProSiteProfiles Tify domain profile. 80 115 IPR010399 -
Bisa10g2038 282 ProSiteProfiles GATA-type zinc finger domain profile. 217 265 IPR000679 GO:0006355|GO:0043565
Bisa10g2038 282 SMART GATA_3 217 270 IPR000679 GO:0006355|GO:0043565
Bisa10g2038 282 CDD ZnF_GATA 222 277 IPR000679 GO:0006355|GO:0043565
Bisa10g2038 282 Pfam GATA zinc finger 223 259 IPR000679 GO:0006355|GO:0043565
Bisa10g2038 282 SMART tify_2 80 115 IPR010399 -
Bisa10g2038 282 Pfam tify domain 85 114 IPR010399 -
Bisa10g2038 282 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 270 - -
Bisa10g2038 282 MobiDBLite consensus disorder prediction 63 81 - -
Bisa10g2038 282 MobiDBLite consensus disorder prediction 28 81 - -
Bisa10g2038 282 MobiDBLite consensus disorder prediction 181 211 - -
Bisa10g2038 282 MobiDBLite consensus disorder prediction 28 44 - -
Bisa10g2038 282 Pfam CCT motif 147 189 IPR010402 GO:0005515
Bisa10g2038 282 PANTHER GATA TRANSCRIPTION FACTOR 28 27 277 IPR045280 GO:0006355
Bisa10g2038 282 ProSitePatterns GATA-type zinc finger domain. 223 250 IPR000679 GO:0006355|GO:0043565
Bisa10g2038 282 ProSiteProfiles CCT domain profile. 147 189 IPR010402 GO:0005515
Bisa10g2038 282 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g2038 Bisa-ChrBisa10 54048708 54052186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g2038 1 280 Tify Gene Family AT1G51600 62.937 2.67e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa10g2038 CCT 7.8e-15 CL0281