Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g2020 ATGAATAATAAGAACACCACAAACACCAATCACGGTAACACCTCCACCACAAAGCCAAAACGCCCTCGCAAAAGGATCCCCAGAGACTCCCCTCCTCAACGAAGCTCTATCTTTCGTGGTGTCACCAGACATCGTTGGACGGGTCGATACGAGGCTCATCTCTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGGGCGTATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTCCCTTTATCAAATTATCAAGAAGAGCTAAAGGAGATGGAGGGTCAATCAAAAGAAGAATACATTGGATCTTTGAGAAGAAAAAGCAGTGGATTCTCACGAGGAGTCTCAAAATACAGAGGAGTAGCAAGACACCACCACAATGGAAGATGGGAGGCTAGGATCGGCAGAGTGTTCGGCAACAAATATTTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCACAGCATATGACATGGCAGCCATAGAGTATCGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATATCAAATGGCTACGTCCTAAATCCCAGGACACCCATGAAAACCCTATAATTAGTAGTAATAACTCTGAACTCCCTAATCCTGAACTTGAATTAGGGTTTGTGTCCCACCACTCCGACGACAAGACGGCGGCCCAGCTTCGATCCGGTGGCGGCGCCTCCATGACGTCGTCGGCGTTAGGGCTTCTCTTGCAGTCATCAAAGTTCAAGGAAATGCTAGAGAGGACAGCTTCTTCTTCATCTGGAGATCATAATTACAGTACTGCAACCTCAACCTCAGATCAGTCAAATTCAAACCCTCCTCGTCGTACTTTTCCTGAAGATATTCAAACATTCTTTGATTGTCAGGACTCAGGCAACTACACAGAAGCTGATGACATAATATTTGGTGATTTGAGCTCAATTAATGATGCTCCAATTTTTCACTCCGAGCTTGATGCTTAG 1035 0.4551 MNNKNTTNTNHGNTSTTKPKRPRKRIPRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLRPKSQDTHENPIISSNNSELPNPELELGFVSHHSDDKTAAQLRSGGGASMTSSALGLLLQSSKFKEMLERTASSSSGDHNYSTATSTSDQSNSNPPRRTFPEDIQTFFDCQDSGNYTEADDIIFGDLSSINDAPIFHSELDA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g2020 344 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 271 - -
Bisa10g2020 344 SUPERFAMILY DNA-binding domain 135 196 IPR016177 GO:0003677
Bisa10g2020 344 CDD AP2 135 196 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 PRINTS Ethylene responsive element binding protein signature 176 196 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 MobiDBLite consensus disorder prediction 1 41 - -
Bisa10g2020 344 FunFam AP2-like ethylene-responsive transcription factor 135 196 - -
Bisa10g2020 344 FunFam AP2-like ethylene-responsive transcription factor 36 102 - -
Bisa10g2020 344 Pfam AP2 domain 38 92 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 Pfam AP2 domain 135 186 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 Gene3D AP2/ERF domain 37 102 IPR036955 GO:0003700|GO:0006355
Bisa10g2020 344 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Bisa10g2020 344 SUPERFAMILY DNA-binding domain 36 102 IPR016177 GO:0003677
Bisa10g2020 344 MobiDBLite consensus disorder prediction 208 227 - -
Bisa10g2020 344 ProSiteProfiles AP2/ERF domain profile. 37 100 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 MobiDBLite consensus disorder prediction 1 16 - -
Bisa10g2020 344 SMART rav1_2 37 106 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Bisa10g2020 344 MobiDBLite consensus disorder prediction 209 224 - -
Bisa10g2020 344 MobiDBLite consensus disorder prediction 270 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g2020 Bisa-ChrBisa10 53846041 53849643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g2020 22 198 AP2-EREBP Transcription Factor Family AT5G57390 69.444 6.65e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa10g2020 AP2 3.5e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g2020 10 53846041 53849643 Bisa10g2020 10 53846041 53849643 ECH