Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa10g1971 | ATGTTTGAGAAAATGGATGAACAATTGCTGGATGCACTATGTGATAGATTAAAGCCAGTATTTTACACAGAGAAGAACCGCATAATTCGCGAAGGCGATCCCGTCGATGAAATGCTCTTCATTATGAGAGGAAATTTGGCTACCATGAGAACAAATGGTGGAAGAACTGACTTCTTCAACTCCTGTGTGTTGAAGGCAGGTGACTTTTGTGGGGAGGAGCTTCTAACATGGGCTTTCGACCCTAACTCATCCTCAAATCTTCCCATTTCAACTAGAACAGTGGAATCTATATCAGAAGTTGAAGGCTTTGCTCTCATGGCTGATGATTTGAAGGGTGTTGCTTCCAAATTTTGGCTCTTTCATCCCAAACATATCGAACACATTTTCAGGTGCTATTCCTTGCAATGGAGGACATGGGCAGTATGCTTCATACAAGCAGCTTGGCGTCGCTACTACAGAAGGAAGATTGAGAAATCACTATTTAAAGCCGAAGACAAGCTACAAGATGCATTGGCAAACGAGGAAGGGTCACAGCCAAGTCTTGGTGCCACCATATATGCATCAAGGTTCACAGCCAATGTACTACGAAGCTTGCAAAAATATGACAAATGTAGCAATAGAATGCCTCAAAAATTACTGCCTTTGATGCCTCAGAAGCCAGCAGAGCCTGATTTTACTTCTCAGGAACTTTATGGGCATGTTAGTCTTGAGCAATTATAA | 720 | 0.4222 | MFEKMDEQLLDALCDRLKPVFYTEKNRIIREGDPVDEMLFIMRGNLATMRTNGGRTDFFNSCVLKAGDFCGEELLTWAFDPNSSSNLPISTRTVESISEVEGFALMADDLKGVASKFWLFHPKHIEHIFRCYSLQWRTWAVCFIQAAWRRYYRRKIEKSLFKAEDKLQDALANEEGSQPSLGATIYASRFTANVLRSLQKYDKCSNRMPQKLLPLMPQKPAEPDFTSQELYGHVSLEQL | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa10g1971 | 239 | SMART | cnmp_10 | 1 | 132 | IPR000595 | - | |
| Bisa10g1971 | 239 | FunFam | Cyclic nucleotide-gated ion channel 1 | 1 | 117 | - | - | |
| Bisa10g1971 | 239 | Coils | Coil | 153 | 173 | - | - | |
| Bisa10g1971 | 239 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 1 | 225 | - | - | |
| Bisa10g1971 | 239 | CDD | CAP_ED | 1 | 110 | IPR000595 | - | |
| Bisa10g1971 | 239 | ProSiteProfiles | IQ motif profile. | 137 | 166 | IPR000048 | GO:0005515 | |
| Bisa10g1971 | 239 | Gene3D | Jelly Rolls | 1 | 118 | IPR014710 | - | |
| Bisa10g1971 | 239 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 1 | 85 | IPR000595 | - | |
| Bisa10g1971 | 239 | SUPERFAMILY | cAMP-binding domain-like | 1 | 117 | IPR018490 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa10g1971 | Bisa-ChrBisa10 | 52859280 | 52860676 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa10g1971 | 1 | 229 | Ion Channels | AT5G53130 | 67.965 | 2.19e-102 | 310 |