Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1958 ATGGCAAGACCCCAACAACGCTATCGCGGCGTTCGTCAGAGGCACTGGGGCTCCTGGGTCTCCGAGATTCGCCACCCTCTCCTGAAGACGAGGATATGGCTGGGCACGTTCGAGACTGCGGAAGACGCAGCGAGAGCCTACGACGAAGCAGCGAGGCTCATGTGTGGTTCCAAGGCTCGAACGAACTTCCCCTACAATCCCAACGACCCACAGACACAGTCGTCTTCCTCCACGTACCTCTCTGCAACTCTGACGGCGAAGCTTCACAAGTGTCACATGGCGTCGCTTTCGCTTCAGATGGGGAACAAGGAGAAAGCGGCGAAACTGGAGGAGCGTCGGGAAATGCAGAGGTGTAAATCTGTGGTTGAACTTGACCCCTTTGGGTCAGGCAATGCCGTCGCCGGAACCAGCGCCGACGCGGGGTTCCGGTGGTCGGAGGCGGAAGGCCACGGCGAAGGGGAAGGAAGGAAGGAAGAGTTTCAGGCAGTGCTTGAAGAAGACCACATAGAGCAGATGATTCAGGAGTTGCTTCATTATGGGTCAATTGAGCTTTGCTCTGTTGGCTCTTCTTAG 573 0.5689 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGSKARTNFPYNPNDPQTQSSSSTYLSATLTAKLHKCHMASLSLQMGNKEKAAKLEERREMQRCKSVVELDPFGSGNAVAGTSADAGFRWSEAEGHGEGEGRKEEFQAVLEEDHIEQMIQELLHYGSIELCSVGSS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1958 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Bisa10g1958 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 109 - -
Bisa10g1958 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Bisa10g1958 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bisa10g1958 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1958 Bisa-ChrBisa10 52571529 52572183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1958 1 187 AP2-EREBP Transcription Factor Family AT5G25190 60.428 3.00e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa10g1958 AP2 8.4e-12 CL0081