LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa10g1954	ATGATGAACGACGATTTCCTCTTCCTGCCCAAACCAGCAACGCCGTGCTGTTTAACCCCACCGTCACCACCACCGTCATCACCGCCGCCGCTCCTCGAGGGGATCGCCGCCGTCGTGGGTCAGCACGTGCTCTTCGGCGGCACCCCCAACACCAACAACCTCGACGACAGCCCCTCCACACGTGGTTTCCTGTCGTTTACCAAATCCGACACGCCGTTAGCCAATACTGCGACTACAGCGACGATGACGACGAGGAGTATCTCGAACGGGGCGAGTCTGTCGGTGAACAAGAGCTACAGGGGAGTGAGGAAGAGGCCGTGGGGGCGGTGGTCGGCGGAGATACGCGACCGCATCGGGCGGTGCCGCCACTGGCTAGGGACGTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCCAGGCGTCTGAGAGGCGCCAAGGCGAGGACCAACTTCGAGATACCCTCTGTTGTGCCCTTGTCGTCCTCTGTTTCATCGTCTTCGAATTCGTCTTCCGAAGGTAAAAAGTTGAGTGGTGGACACAGTCAAAAGGGGAAGAGTAGTAATGTGGGGAATAGCAGAAAGTGTTGTGTGGTTAACTCTGTGGCTCAATTGTTCAGTGTGGTCCCTGAGGTTGCGAGAGAGAGCGATCACAGAGAGGGCAAAAACGGTGGGTTTGGGAATAATAATGTGGAGCTAGACTTGAAGCTTGGTGTCAACTTTGGAGCTTCAAGCAGAATCCATGGTGGTGTAGCTTCAGTCTTCAACTAG	777	0.5727	MMNDDFLFLPKPATPCCLTPPSPPPSSPPPLLEGIAAVVGQHVLFGGTPNTNNLDDSPSTRGFLSFTKSDTPLANTATTATMTTRSISNGASLSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFEIPSVVPLSSSVSSSSNSSSEGKKLSGGHSQKGKSSNVGNSRKCCVVNSVAQLFSVVPEVARESDHREGKNGGFGNNNVELDLKLGVNFGASSRIHGGVASVFN	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa10g1954	258	Pfam	AP2 domain	98	147	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	SUPERFAMILY	DNA-binding domain	98	155	IPR016177	GO:0003677
	Bisa10g1954	258	Coils	Coil	131	151	-	-
	Bisa10g1954	258	Gene3D	AP2/ERF domain	97	156	IPR036955	GO:0003700\|GO:0006355
	Bisa10g1954	258	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	80	203	-	-
	Bisa10g1954	258	CDD	AP2	97	156	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	ProSiteProfiles	AP2/ERF domain profile.	98	155	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	PRINTS	Ethylene responsive element binding protein signature	121	137	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	PRINTS	Ethylene responsive element binding protein signature	99	110	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	MobiDBLite	consensus disorder prediction	161	193	-	-
	Bisa10g1954	258	SMART	rav1_2	98	161	IPR001471	GO:0003700\|GO:0006355
	Bisa10g1954	258	FunFam	Ethylene-responsive transcription factor 2	97	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa10g1954	Bisa-ChrBisa10	52506852	52507628	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa10g1954	41	174	AP2-EREBP Transcription Factor Family	AT1G12980	46.269	2.23e-26	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa10g1954		AP2	3.3e-15	CL0081