Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1935 ATGGTGCTCAGGGCTTATCTTGTTAGGTCGGCGTCTTCAGCATCATCTAAAATTTACATTCGTCTTCATCCCGGGTATCCCGTCTTCGTTCCCAGCATCACTTCGGCTTCTTCTCCGGCTTCCTATCCCGTCTTCGTTCCCAGCATCGGTTCATCTTCGTGCCGGCTTCTCGTTCGTCTTTTTCCCCTGCTTCTGCACAGCCTCTCGCCTCCTCCGTATCTCGATTCTCCATCGTTGTCCCTCCTCTCCTCTGCCGCTTCTCGATTCTCCCTTAGGAATTGTGATTTTGAAGTCATTTTCATTGATATGGAAGAAGAAGATGATTACGTGGAGTATGTGCCCGTGGCCAAGCGCAGGGTCATGGAAGCTCAGAAGATTCTTCAGCGAAAAGGGAATTCCTCTTCTGCAGTCGATGATGATTTGGAGAAATCAAGAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTATGGCGTCGCAGTTGAAACGGGATCAACCTGAGATTAGTCCCACGGAGCAGATTGTTCAACAGGAAAAGGAGATGATTGAGAATTTGTCGGATAGAAAAACCCTCATGTCTGTCCGAGAATTGGCCAAGGGAATCACTTATACAGAGCCCTTACGTACGGGATGGAAGCCACCTTTATCCATTAGAAGAATGCCTATAAAGGAATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTTGATGGTGAAGAAATCCCACCCCCAATTAAGAATTTCAAGGATATGAGGTTTCCCGAGCCAATTTTGAAGAAGTTGAAAGCTAAAGGAATTGTGCAACCGACGCCGATTCAGGTGCAAGGTCTTCCCGTTATCTTATCTGGGAGGGATATGATTGGGATTGCATTTACAGGATCTGGGAAGACTCTGGTCTTTGTGTTGCCTATGATCATGTTAGCATTGCAAGAGGAAATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTAGTCGTTTGCCCATCAAGGGAACTGGCTAGGCAGACATATGAAGTGGTTGAACAATTCTTGACACCTTTGAGAGAAGCTGGATATCCCGAGCTTAGGCCTCTGCTTTGTATTGGTGGGGTGGATATGAGATCACAGCTAGAGGTTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACCCCTGGAAGGTTAAAGGATATGTTGGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTTGATCTGGGATTTGAAGATGATATAAGAGAAGTGTTTGATCACTTTAAAGCTCAAAGGCAGACCCTCTTATTTTCTGCCACTATGCCAACCAAAATTCAGAATTTTGCTAGAAGTGCTCTGGTGAAACCAGTTATTGTCAATGTGGGACGAGCAGGTGCAGCAAATCTTGATGTAATACAGGAGGTAGAGTATGTTAAGCAGGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAGAAAACCCCACCTCCAGTTCTAATATTCTGTGAGAACAAGGCTGATGTGGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAAGATCAAGAAGAGAGAGAGTATGCCATTGCATCCTTTAAAGCTGGGAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGTTTGGATTTTCCTGAAATTCAGCATGTTATTAACTATGACATGCCAGCTGAAATTGAAAATTACGTCCATAGGATTGGTCGTACGGGAAGATGTGGCAAGACAGGCATAGCAACAACATTCATCAACAAGAATCAGAGTGAGACAACCTTACTTGATTTGAAACATCTGTTACAAGAAGCAAAACAACGTATCCCTCCAGTTTTAGCTGAGCTAAATGATCCAATGGAAGAAGATGAAGAAATCACAGACAAAAGTGGAGTCAAAGGTTGTGCATATTGTGGAGGGCTTGGTCATCGTATCCGCGCCTGTCCCAAACTCGAACATCAGAAGAGCATGGCAATTGCTAATAATAGAAGGGATTATTTTGGTTCTGGTGGTTATAGAGGGGAAATCTGA 2073 0.437 MVLRAYLVRSASSASSKIYIRLHPGYPVFVPSITSASSPASYPVFVPSIGSSSCRLLVRLFPLLLHSLSPPPYLDSPSLSLLSSAASRFSLRNCDFEVIFIDMEEEDDYVEYVPVAKRRVMEAQKILQRKGNSSSAVDDDLEKSRVAEAKPSLLVMASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLRTGWKPPLSIRRMPIKECDLIRKQWHIIVDGEEIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPIVPGEGPFGLVVCPSRELARQTYEVVEQFLTPLREAGYPELRPLLCIGGVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIASFKAGKKDVLVATDVASKGLDFPEIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEDEEITDKSGVKGCAYCGGLGHRIRACPKLEHQKSMAIANNRRDYFGSGGYRGEI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1935 690 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 245 273 IPR014014 GO:0003724
Bisa10g1935 690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 631 IPR001650 -
Bisa10g1935 690 Pfam DEAD/DEAH box helicase 269 448 IPR011545 GO:0003676|GO:0005524
Bisa10g1935 690 SMART helicmild6 510 591 IPR001650 -
Bisa10g1935 690 CDD DEADc_DDX41 256 461 IPR044113 GO:0000398|GO:0003724|GO:0005524
Bisa10g1935 690 Gene3D - 214 464 IPR027417 -
Bisa10g1935 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 606 IPR027417 -
Bisa10g1935 690 Gene3D - 470 632 IPR027417 -
Bisa10g1935 690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 460 IPR014001 -
Bisa10g1935 690 Coils Coil 602 622 - -
Bisa10g1935 690 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 195 631 - -
Bisa10g1935 690 FunFam Probable ATP-dependent RNA helicase DDX41 212 461 - -
Bisa10g1935 690 FunFam Probable ATP-dependent RNA helicase DDX41 470 632 - -
Bisa10g1935 690 Pfam Helicase conserved C-terminal domain 484 591 IPR001650 -
Bisa10g1935 690 CDD SF2_C_DEAD 472 600 - -
Bisa10g1935 690 SMART ultradead3 264 475 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1935 Bisa-ChrBisa10 52164354 52167578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1935 245 626 Eukaryotic Initiation Factors Gene Family AT3G13920 30.649 8.08e-56 194