Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1894 ATGGATGTGCTTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCAACAATTCAGCAAATTGATCCTGTTCCAGGGCAAGTTATGGCTCTAGTTCTTTGCCACACAAGAGAGCTAGCTTATCAGATTTCTCACGAATTTGGGAGGTTCTGCACCTATCTTCCAGACATAAGAACTGCTGTTTTCTATGGTGGGGTCAATATAAAGGTTCACAAAGAACTGCTTAAAAATGAATGTCCTCACATCGTTGTTGGAACACCTGGGAGAATATTAGCTCTGGCTAGAGATAAGGATCTTAGTCTAAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTCGAATCACTTGACATGAGAAGAGATGTGCAAGAAATTTTCAGATTGACTCCCCATGATAAGCAAGTGATGATGTTTTCAGCTACACTCAGTAAAGAAATCCGCCCTGTTTGCAAGAAATTTATGCAAGATGTAATATTCTCTTTATGTGGTGACTCTTTGACTTCATATGAGGCACATCCTATGGAGATTTATGTTGATGATGAGGCCAAATTGACTCTGCATGGTCTTGTACAGCACTACATCAAATTGAAGGAGGCAGAGAAGAACCGTAAGTTGAATGATCTTCTTGATGCCCTGGACTTCAACCAAGTGGTCATTTTTGTCAAAAGTGTCAGCAGAGCAGCGGAGTTGAACAAGTTGCTTGTGGAGTGCAACTTCCCATCAATCTGCATACATTCAGGAATGTCACAGGAAGAAAGCATTGCTGCACTAAGTGTTTTGAACTGGGTGGGAAGAGCAGGAAGGTTTGGTACCAAAGGTCTTGCTATCACCTTTGTGTCTTCTTCCTCTGATACTGATGTTCTTAATCAGGTGCAGTCAAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTGCCACTTACATGCCAAACTGA 966 0.413 MDVLCQAKSGMGKTAVFVLSTIQQIDPVPGQVMALVLCHTRELAYQISHEFGRFCTYLPDIRTAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFRLTPHDKQVMMFSATLSKEIRPVCKKFMQDVIFSLCGDSLTSYEAHPMEIYVDDEAKLTLHGLVQHYIKLKEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEESIAALSVLNWVGRAGRFGTKGLAITFVSSSSDTDVLNQVQSRFEVDIKELPEQIDTATYMPN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1894 321 Gene3D - 267 321 IPR027417 -
Bisa10g1894 321 CDD DEADc_DDX39 1 185 - -
Bisa10g1894 321 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Bisa10g1894 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 167 IPR027417 -
Bisa10g1894 321 Gene3D - 192 266 IPR027417 -
Bisa10g1894 321 SMART ultradead3 1 184 IPR014001 -
Bisa10g1894 321 Gene3D - 1 166 IPR027417 -
Bisa10g1894 321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Bisa10g1894 321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 312 IPR027417 -
Bisa10g1894 321 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1894 Bisa-ChrBisa10 51485809 51491016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1894 1 321 Eukaryotic Initiation Factors Gene Family AT5G11170 74.722 0.0 538