Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1856 ATGGCTGGGGCGTCGTTGGCGGACTTGCAAGAGCACATCAAATTGGCGAGGGACTACGCTCTTGAAGGACTCTATGATACCTCTATCATCTTCTTCAATGGCGCAGTTTCTCAGATCAACAAGCACCTAAGCACTGTTGATGACCCTTTAATACGTGCTAAATGGATGAATGCTAAGAAAGCCATTTCTGAGGAAACGGAAGTCGTCAAGCAACTAGATGAGGAGAGAAGGGCTTTCAAAGAAACTCCCACTGGAAGACGCCCTCCTTCACCTCCAATATCTACTAAATCATCATTTGTTTTTCAACCATTAGATGAGTATCCTACTTCATCAAGTGCCATGGATGATCCTGATGTATGGAGGCCACCTAGTCGAGATAATTCAAACAGAAGACCGACAAGACCTGGTCAAGTGGGTACTCGGAAGTCAACACAAGATGGGACATGGGCTCGAGGTTCTACAAGAACAGGTACAACTGGCCGTGGTGCAAAGAGTGGTGCTACAAGTAGGGTTAACTCAGGGGCCCGAGCATCAACTACCGGAAAGAAAGGCACTAATTCTGGAAAGTCTAGCAAGGCAGATTCAGCTAATGGTGACTCTGAAGATGGTAAATCAAAGAAAGGGCAATATGAGGGTCCTGATCCTGATTTGGCAGAGATGCTTGAAAGGGATGTGTTGGAAACGTCACCTGGGGTGAGATGGGATGATGTTGCAGGGCTGACTGAAGCCAAAAGACTTCTAGAGGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAGTATTTCCAGGGAATTAGGCGACCATGGAAAGGTGTTCTGATGTTTGGTCCTCCAGGAACTGGGAAGACGCTGCTAGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTCAATGTTTCTTCTGCTACTTTAGCTTCAAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGTTGTTTGTTTGATCTTGCCAGAGCATATGCACCTAGTACAATTTTCATTGATGAGATTGATTCTCTATGCAATGCTCGAGGGGCATCTGGGGAGCATGAATCATCTAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGCGTAAATAATACTTCAACAAATGAAGATGGTACCCGTAAAATCGTAATGGTGTTGGCAGCTACTAACTTCCCCTGGGACATAGACGAGGCACTAAGGAGAAGGCTGGAAAAACGTATCTATATTCCTCTTCCAAATTTCGAAAGTCGTAAAGAGCTAATACGTATAAATTTGAAGACTGTACAGGTGGCCTCGGATGTAAATATAGATGAAGTGGCTCGCCGGACAGAGGGCTATAGTGGAGATGATCTGACAAATGTCTGTCGGGATGCTTCCTTGAATGGCATGAGGCGTAAGATAGCCGGAAAGACCCGGGATGAGATCAAGAACATGTCGAAGGATGAGATTTCAAAGGATCCAGTCGCTATGTGTGATTTTGAAGAAGCATTGGTGAAGGTCCAAAGAAGCGTTTCTCAGGCTGACATTGAACGTCATGAGAAGTGGTTTACTGAGTTTGGATCTGCATAA 1560 0.4564 MAGASLADLQEHIKLARDYALEGLYDTSIIFFNGAVSQINKHLSTVDDPLIRAKWMNAKKAISEETEVVKQLDEERRAFKETPTGRRPPSPPISTKSSFVFQPLDEYPTSSSAMDDPDVWRPPSRDNSNRRPTRPGQVGTRKSTQDGTWARGSTRTGTTGRGAKSGATSRVNSGARASTTGKKGTNSGKSSKADSANGDSEDGKSKKGQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVQVASDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1856 519 MobiDBLite consensus disorder prediction 129 194 - -
Bisa10g1856 519 CDD Kp60-NTD 7 75 - -
Bisa10g1856 519 MobiDBLite consensus disorder prediction 76 215 - -
Bisa10g1856 519 Pfam ATPase family associated with various cellular activities (AAA) 271 408 IPR003959 GO:0005524|GO:0016887
Bisa10g1856 519 PANTHER AAA DOMAIN-CONTAINING 25 518 - -
Bisa10g1856 519 MobiDBLite consensus disorder prediction 195 215 - -
Bisa10g1856 519 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 519 IPR028596 GO:0008017|GO:0008568|GO:0051013
Bisa10g1856 519 ProSitePatterns AAA-protein family signature. 380 399 IPR003960 GO:0005524|GO:0016887
Bisa10g1856 519 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Bisa10g1856 519 SMART AAA_5 267 410 IPR003593 GO:0016887
Bisa10g1856 519 Pfam AAA+ lid domain 430 471 IPR041569 -
Bisa10g1856 519 Gene3D - 409 495 - -
Bisa10g1856 519 Pfam Vps4 C terminal oligomerisation domain 472 517 IPR015415 -
Bisa10g1856 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 515 IPR027417 -
Bisa10g1856 519 FunFam Katanin p60 ATPase-containing subunit A1 409 495 - -
Bisa10g1856 519 MobiDBLite consensus disorder prediction 91 109 - -
Bisa10g1856 519 Gene3D - 229 510 IPR027417 -
Bisa10g1856 519 FunFam Katanin p60 ATPase-containing subunit A1 229 397 - -
Bisa10g1856 519 Coils Coil 62 82 - -
Bisa10g1856 519 Gene3D - 3 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1856 Bisa-ChrBisa10 50786426 50790483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1856 223 511 Calmodulin-binding Proteins AT3G56690 40.268 8.08e-52 188