Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1849 ATGGATGTTACCTCTCTGGAATTAAATAGAAAGTCCCAAAACGACCGATATCCTTTGCTGATGGAGCAGCCAGAGAGCCATCATCAGCACATAATTGACATTACGACGAATGGTGATGCCGTATCCAGCTCATCTCATGTTGATCAACAGCCTGAAATACATTTAGAACGCAATGAAGATCAAGAGTCTGGTGGTGCACATGTACCTACTCATCAAACAACCACATCCAGATTAAACTCTAGTAATTCCTCATCCACAAGAGGTGAGGGGTATCATCATCGTAGAAGGAGTCCATTGAATTCTGGACTATGGATTTCAGTTGAGCTTGTTGTCACAGTGAGTCAGATCATAGCATCAGCTGTCGTTTTGTCATTATCAAGGAATGAAAATCCGCAAGCCCCATTATTTGCATGGGTTGTGGGATATGCATCTGGTTGTGTTGCCACACTTCCTATTCTGTATTGGCGTTATCGGAACCATCATCAAAGTACTGAACAAGATATCTCTCAACAATCTCAAGGATCTTCCGAAAGCAATCCTCCACAATCTACTTCATATACTGCTGTCTCTGATGCTCATGTTTTAGACGAGGATAATGGTCATGCTGCAGAGTCAGCTGCAAGAAATACTAGGATTCTTGGAGCATTTTTCTCTAGGCTTAATGGATTAGCAGATCATTTCAAAATGGCTTTAGATTGCTTTTTTGCAGTTTGGTTTGTCGTGGGCAATGTATGGATCTTTGGAGGTCATTCTTCTCCTTCAGATGCTCCAAAATTGTACAGGTTATGTATAGTGTTTCTTACTTTTAGCTGCATCGGATATGCTATGCCATTTATCCTTTGTGCAACAATTTGTTGCTGCCTACCTTGCTTAATCTCTGTTCTTGGCATCCGGGAAGACTTTTCTCAAACTAGAGGAGCAACAGTAGAGTCTATTAATGCTCTGCCAATTTACAAGTTCAAATTGAAGAAAATTGAAAATAGTGATAATCCGGATGTCAGCACGTCCATTGATGAAGGTGGGATCTTTGCTGCAGGGACAGAAAAGGAGCACCCCATATCAGGAGAAGACGCCGTATGTTGCATTTGCTTGGCAAAATATGCTGACAATGATGAGCTTAGGGAGTTACCTTGCTGTCATTTCTTTCATGTAGAGTGTGTTGACAAATGGTTGAAACTAAACGCATCGTGTCCTCTTTGTAAAAGTGATGTTGGCAAGATTAGTGAAGTGCCACCTTCAGCCCGGGACTCCAGTTAG 1257 0.4177 MDVTSLELNRKSQNDRYPLLMEQPESHHQHIIDITTNGDAVSSSSHVDQQPEIHLERNEDQESGGAHVPTHQTTTSRLNSSNSSSTRGEGYHHRRRSPLNSGLWISVELVVTVSQIIASAVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRYRNHHQSTEQDISQQSQGSSESNPPQSTSYTAVSDAHVLDEDNGHAAESAARNTRILGAFFSRLNGLADHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCLISVLGIREDFSQTRGATVESINALPIYKFKLKKIENSDNPDVSTSIDEGGIFAAGTEKEHPISGEDAVCCICLAKYADNDELRELPCCHFFHVECVDKWLKLNASCPLCKSDVGKISEVPPSARDSS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1849 418 SUPERFAMILY RING/U-box 354 408 - -
Bisa10g1849 418 SMART ring_2 360 400 IPR001841 -
Bisa10g1849 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 404 - -
Bisa10g1849 418 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Bisa10g1849 418 MobiDBLite consensus disorder prediction 165 186 - -
Bisa10g1849 418 MobiDBLite consensus disorder prediction 65 87 - -
Bisa10g1849 418 Pfam Ring finger domain 360 401 IPR001841 -
Bisa10g1849 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 409 IPR013083 -
Bisa10g1849 418 MobiDBLite consensus disorder prediction 56 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1849 Bisa-ChrBisa10 50536072 50538349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1849 1 408 C3H Transcription Factor Family AT1G80400 57.831 9.77e-166 469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1849 10 50536072 50538349 Bisa10g1849 10 50536072 50538349 ECH