Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1824 ATGTGCCTCCACTCATTGATTGTGCATTGAGGCCATGGGAGAAATGGGCTGGAGAAGAAACTACAGAGGAGTAAGGCAGAGGCCATGGGGGAAATGGGCAGGAAAAGAAACTACAGAGGAGTGAGGCAGGGGCCATGGGGGAAATGGGGAGCTGAGATTCGAGATCCGAAGAAAGCTGCGAGGGTTTGGCTTGGGACATTCGATACTGCCGAGGCTGCTGCTCTTGCGTACGATGAAGCTGCTGCCGCCAATAGATGCAGACTAACTTAA 270 0.5296 MCLHSLIVHXGHGRNGLEKKLQRSKAEAMGEMGRKRNYRGVRQGPWGKWGAEIRDPKKAARVWLGTFDTAEAAALAYDEAAAANRCRLT 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1824 89 SUPERFAMILY DNA-binding domain 37 84 IPR016177 GO:0003677
Bisa10g1824 89 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Bisa10g1824 89 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bisa10g1824 89 Gene3D AP2/ERF domain 36 88 IPR036955 GO:0003700|GO:0006355
Bisa10g1824 89 PANTHER DNA-BINDING DOMAIN 25 83 IPR044808 GO:0003700|GO:0009873
Bisa10g1824 89 SMART rav1_2 37 89 IPR001471 GO:0003700|GO:0006355
Bisa10g1824 89 ProSiteProfiles AP2/ERF domain profile. 37 89 IPR001471 GO:0003700|GO:0006355
Bisa10g1824 89 Pfam AP2 domain 37 82 IPR001471 GO:0003700|GO:0006355
Bisa10g1824 89 CDD AP2 37 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1824 Bisa-ChrBisa10 49517149 49518621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1824 33 81 AP2-EREBP Transcription Factor Family AT2G33710 85.714 9.60e-26 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa10g1824 AP2 6.5e-13 CL0081