Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1636 ATGATGAAGGGTTTGATGTTCCAGCAACAACAGCAACAAGCAGTGGAGGAGAATATGTCTAATTTGACTTCTGCATCTGGTGAAGCCAGTGTTTCCTCAGGCAACAGAAATGAAATCGGCACCAATTATCCTCCTCAACAATACTTCGCTACACCACCAACTCAAACTCAAACTCAGCCTGTGAAGAAAAAGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAAGTTATAGCCTTGTCCCCCAAGTCTCTTCTGGCGACTAACAGGTTCATCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGACCAGAATCTTCAACTCCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAGCCCACGTGTGTGCACCATGACCCGTCGAGGGCCCTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGATAAGTGCTCCAAGAAGTATGCGGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCAAACCCACTTCTTCCCTCTCCATTACCATCTGGTTCTTCTGCAGCATCTCACATTCTGAATCTCCAGACCCAATTGAATAATCATCATCCACAACCACAACCACAAGGTCTCCATGCTTTCCCGTTGAAGAAAGAGCAGCAAAGTTTCAGCCTTAGGCCGGAAATGCCCCCTTGGCTTGCCCCCCCCGGCCCACCCACCATTGATCTCTCATCCCCTTCTTCAATCTTCTCCACAGGATTGGATCAGGACTTCTCACAAACACCTCACAGTCATGACCTGAGGCTCCAAGAAAACCCAAACTCAAATCCAAATCCAAACCCTAACCCTAGCCTTGGCCCCACCCTCCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCTACAGCCTTGCTGCAGAAAGCAGCTCAAATGGGTGCAACCATCACCAAATCTGGCTCCATAATCAGGACCCACCACCAGGCTCACGTGCCTGATCCTGCCACCACATCAATCTCCTCAAGTGGTGGTAATGGTAATTTTGGTTTGAATTTGTCATCACGTGAATCTGCAGTAGTACTACTCCCCAATTCTGCTTCTTCTGCTGCTGCTAGTACTACTACTAGTACTATTGCTGCTGCTTCCTCAGGTGTTCCTCCTCCATCCTTTCTTCTTCACGATGTTATGAGCTCTTTCTCTGCAAATACTTCAGGGTTTGAAGGAACTTCTTTTGAGGAGGCTTTTGGTGGGATTTTTAATTCCAAAAATAATAAGGATGGGAACTTTCATAATGACCCCCTTTCTAAAACAGCCAACGCCGGCTGTCTGGGTAGCGGCGGCGGCGGCGGCGGGAATGAAGGGTTGACGAGAGATTTCTTGGGTCTGAGACCTCTGTCTCATAATGAGATTTTCAGCATTGCTGGAATTGGAAGCTGCATGAACCACCCATCTTCCCATGATCAACAGAATCAATCCCAAAAGCCATGGTAA 1644 0.483 MMKGLMFQQQQQQAVEENMSNLTSASGEASVSSGNRNEIGTNYPPQQYFATPPTQTQTQPVKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARANPLLPSPLPSGSSAASHILNLQTQLNNHHPQPQPQGLHAFPLKKEQQSFSLRPEMPPWLAPPGPPTIDLSSPSSIFSTGLDQDFSQTPHSHDLRLQENPNSNPNPNPNPSLGPTLPAYQPAPSPHMSATALLQKAAQMGATITKSGSIIRTHHQAHVPDPATTSISSSGGNGNFGLNLSSRESAVVLLPNSASSAAASTTTSTIAAASSGVPPPSFLLHDVMSSFSANTSGFEGTSFEEAFGGIFNSKNNKDGNFHNDPLSKTANAGCLGSGGGGGGNEGLTRDFLGLRPLSHNEIFSIAGIGSCMNHPSSHDQQNQSQKPW 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1636 547 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Bisa10g1636 547 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Bisa10g1636 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 532 IPR031140 -
Bisa10g1636 547 MobiDBLite consensus disorder prediction 1 64 - -
Bisa10g1636 547 Gene3D Classic Zinc Finger 72 138 - -
Bisa10g1636 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Bisa10g1636 547 MobiDBLite consensus disorder prediction 327 345 - -
Bisa10g1636 547 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Bisa10g1636 547 MobiDBLite consensus disorder prediction 294 326 - -
Bisa10g1636 547 FunFam protein indeterminate-domain 12-like 70 138 - -
Bisa10g1636 547 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Bisa10g1636 547 MobiDBLite consensus disorder prediction 271 351 - -
Bisa10g1636 547 SMART c2h2final6 167 187 IPR013087 -
Bisa10g1636 547 SMART c2h2final6 91 113 IPR013087 -
Bisa10g1636 547 SMART c2h2final6 132 162 IPR013087 -
Bisa10g1636 547 Gene3D Classic Zinc Finger 145 225 - -
Bisa10g1636 547 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1636 Bisa-ChrBisa10 44679512 44681965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1636 19 547 IDZ Gene Family AT3G13810 46.816 2.39e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa10g1636 zf-C2H2_jaz 8.1e-05 CL0361