Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1629 ATGGATTATTATTCCCAAGAGAGGCAATTGGAAGCTTACCCTGTCACCTACAATGGTGAAGAATTTCGTGAGCAAATTGATCGGCAACAAGAGGGATTTTATTCGGGGAATGATTTTGATCCGAACGATAACATAAATAGTGCGGGTGTCACGATAAAGCCCACATCCAATCCTCGTGATTCATCTTCAGGAAAACTCTTCGTTGGTGGTATATCCTGGGAGACTACTGAAGAGTCGTTTTTTAAATACTTCAACAAATATGGAGAAGTAGTAGATTCTGTGATAATGATGAATAAACACTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCTGATTCTGCTGTGGCTGATAAAGTTTTGGCACAAGAACATACAATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTTCCTAGGGAGGACATGGAAGGAGTAGGAGTATTGAAAACAAAAAAGATTTTTGTTGGTGGAATACCCCAATTTTTCACTGATGATGAGTTGAAGGAATACTTTTTAGCTTATGGTAGTATTGTTGAACACCAAATTATGCTAGATCATAAGACTGGGCGATCTAGAGGCTTTGGGTTTGTCACTTTTGACAGTGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAACTCGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAACCCAAAAGAGCTGGATTTGATTACAGCGGCAGTTCACGGAATTCGTTTGGTGGTTATGGTGGTGGGATGGATGGATTGGGTAGGCATAATTCTAGAGGACGTAATGATGGGAAAAAGGTCAGGCCATATGCAGACTCTGGCGTAAATGGGGTGTATAGCACTTTTGAGGATGGGAGCTATGGTGGAATGACTGCCAATTCTTATGTTGGATATGGTGGATATGGTTATGGATTTGGGTATGGTGGTCCAATGTATTGCTTTGGTGGTTATGGGGTCAACGCTTACGGTAATCCTGGTGTCTATGGTGGTGGAATTGCTATGTATGGAGATGGTAAGGCATATGGAAGAGCCGGTGGTTACAATCGCACCAGCAGCCACGATGGTGGCAAAGTGGTTGACAAGGATGGTGGTCATAATACTGAAAGATACCATCCTTACTGGAAGTGA 1137 0.4248 MDYYSQERQLEAYPVTYNGEEFREQIDRQQEGFYSGNDFDPNDNINSAGVTIKPTSNPRDSSSGKLFVGGISWETTEESFFKYFNKYGEVVDSVIMMNKHSGRPRGFGFVTFADSAVADKVLAQEHTIDGRVVEVKRTVPREDMEGVGVLKTKKIFVGGIPQFFTDDELKEYFLAYGSIVEHQIMLDHKTGRSRGFGFVTFDSEDSVEKVFSVGKIHELGGKQVEIKRAEPKRAGFDYSGSSRNSFGGYGGGMDGLGRHNSRGRNDGKKVRPYADSGVNGVYSTFEDGSYGGMTANSYVGYGGYGYGFGYGGPMYCFGGYGVNAYGNPGVYGGGIAMYGDGKAYGRAGGYNRTSSHDGGKVVDKDGGHNTERYHPYWK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1629 378 Gene3D - 149 272 IPR012677 -
Bisa10g1629 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 140 IPR000504 GO:0003723
Bisa10g1629 378 SMART rrm1_1 154 227 IPR000504 GO:0003723
Bisa10g1629 378 SMART rrm1_1 65 136 IPR000504 GO:0003723
Bisa10g1629 378 FunFam Heterogeneous nuclear ribonucleoprotein 1 63 145 - -
Bisa10g1629 378 CDD RRM1_hnRNPA_hnRNPD_like 66 136 - -
Bisa10g1629 378 Gene3D - 62 145 IPR012677 -
Bisa10g1629 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 133 IPR000504 GO:0003723
Bisa10g1629 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 222 IPR000504 GO:0003723
Bisa10g1629 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Bisa10g1629 378 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 47 377 - -
Bisa10g1629 378 SUPERFAMILY RNA-binding domain, RBD 56 144 IPR035979 GO:0003676
Bisa10g1629 378 SUPERFAMILY RNA-binding domain, RBD 151 255 IPR035979 GO:0003676
Bisa10g1629 378 MobiDBLite consensus disorder prediction 32 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1629 Bisa-ChrBisa10 44594299 44597111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1629 59 243 Eukaryotic Initiation Factors Gene Family AT1G71770 29.442 9.18e-13 67.8