Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1591 ATGGGGAATCAGAAGCAGAAGTGGACAGCGGGGGAGGAGGAAGCATTACTCGCTGGAATAGCGAAGCATGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGACTTCGCGCCTTTCCTCACTCACCGTTCCAACATTGACCTCAAGGATAAATGGAGAAATTTAAGTGTTAATACTGCTGCTCAAAGTTCAAAAGATAAAGCAAGGAATCCAAAGATCAAAGCTATTGCTCCTACCCCAGTTCCCAGTGTTCAAAATGCTACTCCTGTTGCCCCAGTTCGTCAAGGTGCAGCTTCTGATGCTGTCATGGATGATCCTTCTCAAAAAGCACAAGATGTCAAGCATGCTCCACGGTATAACGGAATGGTTTTTGAAGCTTTGTCATCAATAAAAGATACTAATGGTTCTGATATCAATACCATTGTTAGTTTCATTGAGCAAAGGCATGAGGTTCCTCCAAATTTCAGAAGGGCGTTAAGTACAAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAGATAAAAAAAGAAACACCTGGGTCAAAAACACCTCCATTGAAACAGAAGGATGTCTGGCCACATCAACCACCACCCTCTAATTTTGTATCAACTTATGAGACCGTAAAGGATGCTGCTGATACTGCAGCCTACAGACTTGCCGAAGCCGAAAACAAATCATTTCTGGCTGCCGAGGCAGTCAAGGAGGCAGAAAGACTCTCAAAGTTTTCTGAAGATGCTGATTCAATATTACAGCTAGTGAAAGAGATTTATGAAAAATGTTCACGCGGTGAAACTTTTCTCGTGGCTTGA 834 0.4329 MGNQKQKWTAGEEEALLAGIAKHGPGKWKNILKDPDFAPFLTHRSNIDLKDKWRNLSVNTAAQSSKDKARNPKIKAIAPTPVPSVQNATPVAPVRQGAASDAVMDDPSQKAQDVKHAPRYNGMVFEALSSIKDTNGSDINTIVSFIEQRHEVPPNFRRALSTRLRRLVAQGKLEKVQNCYKIKKETPGSKTPPLKQKDVWPHQPPPSNFVSTYETVKDAADTAAYRLAEAENKSFLAAEAVKEAERLSKFSEDADSILQLVKEIYEKCSRGETFLVA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1591 277 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Bisa10g1591 277 Gene3D - 8 87 - -
Bisa10g1591 277 SMART sant 4 59 IPR001005 -
Bisa10g1591 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Bisa10g1591 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bisa10g1591 277 Pfam linker histone H1 and H5 family 118 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa10g1591 277 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bisa10g1591 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa10g1591 277 PANTHER SINGLE MYB HISTONE 4 1 274 IPR044597 GO:0003691
Bisa10g1591 277 MobiDBLite consensus disorder prediction 184 203 - -
Bisa10g1591 277 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Bisa10g1591 277 FunFam Telomere repeat-binding factor 1 8 87 - -
Bisa10g1591 277 CDD SANT_TRF 6 56 - -
Bisa10g1591 277 Gene3D - 112 195 IPR036388 -
Bisa10g1591 277 SUPERFAMILY "Winged helix" DNA-binding domain 116 195 IPR036390 -
Bisa10g1591 277 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1591 Bisa-ChrBisa10 43743176 43747565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1591 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 51.724 3.11e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa10g1591 Linker_histone 5.5e-10 CL0123