Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1579 ATGTTCTTCCCATTCAATATCCGTGTTTTGGAAGGCTCATCTCGGTGGAATTCTTCTGCATCTGTTGTTCAGCGATCATCTACCTCCCATAGTTTGAGCCAGAAAATGGGAGTTCTGCCACAACAATGTCATAATACCAAGCCCCTGAGTTTCCAATTTCAAGATCAGGACTCATCCTCATCTCAATCGACTGGTCAATCTTATCCTGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCTATCCAGTATAGCAATTCTTCTTGTTCAACATGTAGCTTGACTGCAGGAAGTCTCTTCGGTTCATCCATGGGAACTCAGAGTTTTTGCTTTCCTCCTTTACAGGAGGATCATAACCAATCAATTGCTCATCTTGCATTCAACCATGCGGACTCATGCTATGATGGTGTAATAGCTGCTGCATATGGGCCACAGTCCAAGATTCATCATACTCAACTAATGGGATTAACTTCTGTTCGAGTTCTTCTTCCTCTTGATCTTACAGAAGAACCGATATTTGTGAATGCAAAGCAGTATCATGCTATTCTGAGGCGTAGACAGTATCGTGCAAAACTCGAAGCACAGAACAAACTCGTCAAAGCTCGGAAACCATATCTTCATGAGTCCCGGCATTTACATGCATTAAAGAGGGCTAGAGGTTCCGGCGGACGCTTTCTCAACACCAAACAACTCCAAGAATCGAAGCTCACAAAAAGCAGCCACAGCCCGAATGTTTCTGGCAGTACTAGGTTGAATTTGAGCGGAAATATGTCAGAATTTGAAGTTCATCATCTTGTAGAAAACTACAGAGACGGCGCTTGCACCACCGGTTCTGATATCACAAGCGCATCAAACAGCAATGACATCTTGCGGCAACAAGAGTCCCACTTCAGGCTCTCTAGTTACCCTTCTCACTTCGGAAGGAACAAGCAAGTTTACTTGGCTGATGCTGGCGATGGTGGCGGGAATCAGCAACGGTTGTCCGTCCTCATGTGA 993 0.4461 MFFPFNIRVLEGSSRWNSSASVVQRSSTSHSLSQKMGVLPQQCHNTKPLSFQFQDQDSSSSQSTGQSYPEVGSAQSGQISIQYSNSSCSTCSLTAGSLFGSSMGTQSFCFPPLQEDHNQSIAHLAFNHADSCYDGVIAAAYGPQSKIHHTQLMGLTSVRVLLPLDLTEEPIFVNAKQYHAILRRRQYRAKLEAQNKLVKARKPYLHESRHLHALKRARGSGGRFLNTKQLQESKLTKSSHSPNVSGSTRLNLSGNMSEFEVHHLVENYRDGACTTGSDITSASNSNDILRQQESHFRLSSYPSHFGRNKQVYLADAGDGGGNQQRLSVLM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1579 330 ProSitePatterns NF-YA/HAP2 subunit signature. 172 192 IPR018362 GO:0003677|GO:0016602
Bisa10g1579 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 297 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 224 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 MobiDBLite consensus disorder prediction 229 250 - -
Bisa10g1579 330 Gene3D - 167 228 - -
Bisa10g1579 330 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Bisa10g1579 330 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1579 Bisa-ChrBisa10 43572644 43576213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1579 28 328 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.551 2.07e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bisa10g1579 CBFB_NFYA 1.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1579 10 43572644 43576213 Bisa10g1579 10 43572644 43576213 ECH