Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1571 ATGGCGACCCAAATGAGCAAAAAGCGGAAGTTTGTGGCAGATGGAGTTTTCTTTGCGGAGCTCAATGAGGTTTTGACGAGGGAGCTCGCAGAGGATGGGTATTCTGGGGTTGAAGTTAGGGTTACGCCAATGCGGACGGAGATCATCATAAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGGAGAATACGTGAACTGACTTCTGTTGTGCAGAAGCGTTTTAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAACTTCTAGGAGGGCTTGCTGTTCGGAGGGCTTGCTATGGTGTCTTAAGGTTTGTCATGGAAAGTGGTGCTAAAGGTTGTGAGGTTATTGTTAGCGGCAAGCTTAGGGCTCAGCGTGCCAAATCTATGAAATTCAAAGATGGGTACATGATATCATCTGGTCAGCCTGTAAAAGAATATATTGACTCTGCTGTGAGGCATGTGCTTTTGAGACAGGGTGTCCTTGGGATCAAGGTGAAAATCATGCTCGATTGGGATCCCAAGGGTAAGCAAGGTCCAACCAAACCAATTCCTGATATGGTCACCATTCATCTGCCAAAGGAGGAAGATGATTACACAGTCAGGACCCTGCCACAGCCGGCCAACATAGAAATCGCAGAACTACTGAGTGGACTCGCTCACCAGTCACGCTTTTTGCCTCTATGTTTGTATACTGGAGGTGCATGTGGATTTTCCATGGAAACATTGGTTGGAATTGAGGATAATGATGAAGGGAAGCTTGAAGACAGTGGAGTTGATAGGAGTAGCTCTGCTTTGTTTTCATCGAAGCAGATCGCCAACCCAGTTGTGTACAAGCTTGTGCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGATTATGACCAGATTGAAATGGGTGGTGTTGATCCAGACACTGGGCACAGTGAAGGATGCACTTCAACTGAAAGGTCGTCCTCTGGGAAGCTTCAAGTGGAGTGCTCAGAAGACACTGCAGAGGAAGATCTGGGGAAATTAAATGCACGTCTTCAGATGTTGCAAAAGGTCAAAGAGGAAGAGAAGCTTCGTTTGGCTTGTGGATCAGCTGGTCTTTCTTATGTAAATATGGACATCCAGTGTTCTGCTGCTGAATTGCCTGTCATGGATGGGACTATTCAATCTGATGTGCCGTTCGAGGACATTGTTCCTTCTTTAGCTCCTACTTTGAATAATAGTCATAGTAATCAATCACAAAGTATTGTTGAGTGTTCCAGACCTTCAGAAGGACAATTAGAAAGTGGATCGTCTTCTTCTGCTGTCTATTCTACTTTGAAGCCTGATTTCTTGATGTTAAAAGGAGAAATATGCTTGGACAAGTTATCAATCAGAGAACTTCATGAACTGTTCAAAGTGACTTTTGGCCGGGAAACTACTGTGAAAGACAAGCAGTGGCTGAAGAGGAGGATTGCCATGAGTTTAACTAACTCATGTGATGTTTCGGCAACAACTTTCATAGTTACAGATAACAAATTAGTTAAAAAATGTGAGGAAGATAGTCATGGTAATATGAATGCTGTACTCTTAAATGATTCTGCAGCTGGAGAAGAGGATATCAACTGCAAGGATTCATCAACTGCTGATGGTACTGGAATTCAAGATAATCAAATTGTTGCTGGAAAGACACTGAGAAATCATAACATGGAACATAATTTGAGTGGTGTGAATCTTCAGATTGAACAAACAGCTGCCAAAAGATTTCGAAAGCCCACTAAGAGATATATTGAAGAACTCTCTGAAACTGAATCCAGAGACCACAATCCTAGATTGTCAAGTTCAAATAAAAATATGGGGCTTGGCCATGTCTCTCCAAACTCATACATGGGGCCTGCTAGGAATGTTTTTTCAGAGGGGAGAACAGTTATAACTAGGTTTGACTCTCTTGGAGGTTCTGGGGTTTACATACCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGAAAAATATCATGTCTCTTATGAAATTCCATGCAAGCAGTGGCATGGTGGAGGCTGCAAAATTAAATAACAAGGCGCCTGGAGAGCATGGTTTTCAGGAAGATAGTGATAGTTGTGATAAAGTCTTGAAATCAAGATCCACACCTGCAAAATTTCAGCAGCTATCTACTGTTGAGCCTGTAAAAGGTAAACCAGTAATGGACTCAATTGAGCTACGACAGGAACCGAGACAGAGAAAAGCAGATCTATCTACCTATTCTTCAGATGACAATATAGTGACGGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACTCTTGTTGAGGTAATGAAATTGGTTGAAGGTGTATCAAGGTGTGGAGCAGGGAGATGGTCCGAGATCAAACGGCTTGCCTTTGCATCCTACTCATATCGCACATCTGTTGATCTTAAGGATAAGTGGAGGAATTTGCTTAAAGCTAGCTTTGCACAGACACCTGCAGATGAGGGGATAAACTCACGGAAGCACGGTGCAGTGCCCATTCCCGAGCCAATTTTAGTGCGAGTAAGAGAGCTTGCTGAGATGAACTCTCAGGTACCTTCAAATTTCAGCTCAAGCAAGCTAACAGCCGGGCCCGGGATCACCCATGATGATAGATCAGGGTTCTTGTAG 2739 0.4403 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDMVTIHLPKEEDDYTVRTLPQPANIEIAELLSGLAHQSRFLPLCLYTGGACGFSMETLVGIEDNDEGKLEDSGVDRSSSALFSSKQIANPVVYKLVRVEGDGRLVPATDDEVMEVEDFLDYDQIEMGGVDPDTGHSEGCTSTERSSSGKLQVECSEDTAEEDLGKLNARLQMLQKVKEEEKLRLACGSAGLSYVNMDIQCSAAELPVMDGTIQSDVPFEDIVPSLAPTLNNSHSNQSQSIVECSRPSEGQLESGSSSSAVYSTLKPDFLMLKGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFIVTDNKLVKKCEEDSHGNMNAVLLNDSAAGEEDINCKDSSTADGTGIQDNQIVAGKTLRNHNMEHNLSGVNLQIEQTAAKRFRKPTKRYIEELSETESRDHNPRLSSSNKNMGLGHVSPNSYMGPARNVFSEGRTVITRFDSLGGSGVYIPCVSRVRRSRPRKNIMSLMKFHASSGMVEAAKLNNKAPGEHGFQEDSDSCDKVLKSRSTPAKFQQLSTVEPVKGKPVMDSIELRQEPRQRKADLSTYSSDDNIVTVPTAKGGMRRKHHRAWTLVEVMKLVEGVSRCGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQTPADEGINSRKHGAVPIPEPILVRVRELAEMNSQVPSNFSSSKLTAGPGITHDDRSGFL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1571 912 Gene3D - 787 895 - -
Bisa10g1571 912 ProSiteProfiles Myb-like domain profile. 800 847 IPR001005 -
Bisa10g1571 912 SUPERFAMILY Homeodomain-like 798 857 IPR009057 -
Bisa10g1571 912 CDD KH-II_40S_S3 5 95 - -
Bisa10g1571 912 FunFam 40S ribosomal protein S3 93 227 - -
Bisa10g1571 912 Pfam Myb-like DNA-binding domain 799 847 IPR001005 -
Bisa10g1571 912 Coils Coil 361 388 - -
Bisa10g1571 912 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Bisa10g1571 912 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 282 893 - -
Bisa10g1571 912 SMART sant 796 849 IPR001005 -
Bisa10g1571 912 MobiDBLite consensus disorder prediction 334 353 - -
Bisa10g1571 912 MobiDBLite consensus disorder prediction 432 462 - -
Bisa10g1571 912 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bisa10g1571 912 CDD SANT_TRF 798 848 - -
Bisa10g1571 912 FunFam 40S ribosomal protein S3 1 92 - -
Bisa10g1571 912 MobiDBLite consensus disorder prediction 890 912 - -
Bisa10g1571 912 Pfam KH domain 20 93 IPR004044 GO:0003723
Bisa10g1571 912 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Bisa10g1571 912 Gene3D - 1 91 IPR015946 -
Bisa10g1571 912 Gene3D - 93 219 IPR036419 -
Bisa10g1571 912 MobiDBLite consensus disorder prediction 622 643 - -
Bisa10g1571 912 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Bisa10g1571 912 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 792 851 IPR017930 -
Bisa10g1571 912 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Bisa10g1571 912 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1571 Bisa-ChrBisa10 43369281 43383606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1571 1 219 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 91.324 2.03e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa10g1571 Ribosomal_S3_C 4.6e-24 No_clan