Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1479 ATGTCCTCCTTATCCCCCAACGTTCTCAACACGGAAGAATCTTCTGCAAGAGTTACTTCTCCGAAAGGGAAAGAGAAAGAGAGCGGGGAATCTTCTGGAAGCTTCCACGACTCCGTGAGCTTCTGTGAAATCTGCAAGGACACTAAAGCCACTGACGAAATGTTCACAAACAACAAAAACTGCACCCACACGTTCTGTTCAGACTGTACTGCATCCTATATTTCATCGAAGATTCAAGATTCCATATCGGTGAAGTGCCCCGATCCAAGATGCAGGGGAGTGTTGGATCCTCAGTTATGCCGTACGATCGTGTCAGAGGAGGTGTTTGCGAGGTGGGCAGATGCTCTGTGCGAGAATCTGTTTGTGGGGTATGAGAAATTTTACTGTCCCTTCGAGGATTGCTCGGCGATGATGGTGGTGGAGGAAGGGGACGAGGTTTGTGTGACATCCTCGGAGTGTCCGAACTGCAGGAGGCTGTTCTGTGCGCAGTGTAGGGTTGCGTGGCATGCAGGGATGGAGTGTGGGGAGTTTCAGGCCTTGAAGAAAGGTGAGATAGAGAAGGATGATCTGTTGTTGATGGAGCTTGCGAAGGATAAGAAATGGAGGAGATGCCCTCACTGCAAATTCTATGTGGAGAGGGTTGATGGATGCCCTCATATTTCTTGCAGGTGTGGAAATCAGTTTTGTTATAGCTGTGGATCCGATTGGAATCAACATCATGAGTGTCCCCCTCCCTGA 738 0.4919 MSSLSPNVLNTEESSARVTSPKGKEKESGESSGSFHDSVSFCEICKDTKATDEMFTNNKNCTHTFCSDCTASYISSKIQDSISVKCPDPRCRGVLDPQLCRTIVSEEVFARWADALCENLFVGYEKFYCPFEDCSAMMVVEEGDEVCVTSSECPNCRRLFCAQCRVAWHAGMECGEFQALKKGEIEKDDLLLMELAKDKKWRRCPHCKFYVERVDGCPHISCRCGNQFCYSCGSDWNQHHECPPP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1479 245 MobiDBLite consensus disorder prediction 1 17 - -
Bisa10g1479 245 CDD Rcat_RBR_unk 200 236 - -
Bisa10g1479 245 SUPERFAMILY RING/U-box 119 178 - -
Bisa10g1479 245 SUPERFAMILY RING/U-box 38 119 - -
Bisa10g1479 245 SMART ibrneu5 184 242 IPR002867 GO:0008270
Bisa10g1479 245 SMART ibrneu5 110 174 IPR002867 GO:0008270
Bisa10g1479 245 MobiDBLite consensus disorder prediction 18 32 - -
Bisa10g1479 245 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Bisa10g1479 245 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 238 IPR031127 GO:0004842|GO:0016567
Bisa10g1479 245 SUPERFAMILY RING/U-box 188 242 - -
Bisa10g1479 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 122 IPR013083 -
Bisa10g1479 245 Pfam IBR domain, a half RING-finger domain 127 174 IPR002867 GO:0008270
Bisa10g1479 245 Pfam IBR domain, a half RING-finger domain 195 242 IPR002867 GO:0008270
Bisa10g1479 245 MobiDBLite consensus disorder prediction 1 36 - -
Bisa10g1479 245 Pfam Zinc finger, C3HC4 type (RING finger) 42 87 IPR018957 GO:0046872
Bisa10g1479 245 Gene3D - 172 244 - -
Bisa10g1479 245 ProSiteProfiles TRIAD supradomain profile. 38 245 IPR044066 -
Bisa10g1479 245 FunFam RBR-type E3 ubiquitin transferase 37 123 - -
Bisa10g1479 245 CDD BRcat_RBR_unk 125 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1479 Bisa-ChrBisa10 40489351 40490825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1479 42 234 C3H Transcription Factor Family AT2G19610 27.451 1.34e-17 79.3