Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1477 ATGTCCTCTATATCCACCAAAATTCTCAAGACGGTAGAATCCTCTGCAAAAGTTACTTCTCTGAAGGGGAAAGAGAAAGAGAGCGGGGAATCTTCTGGAAGCTTCGACGACTCCGTGAGCTTCTGTGAAATCTGCAAGGACACTAAAGCCACTGACGAAATGTTCACCAACAACAAAAACTGCACCCACAAGTTCTGTTCCGACTGTACAACATCCTATATTTCATCGAAGATTCAAGAATCCATATCGGTGAAGTGCCCCGATCCCAGATGCGGGGGAGTGTTGGATCCTCTGTTGTGCCGGATGGAGTGCGAGGAGTTTCAGGCCTTGAAGAAAGGTGAGAAAGAGAAGGATGATCTGTTATTGATAGGGCTTGTTAAGGATAAGAAATGGAAGAGATGCCCTCACTGCAAATTCTATGTGGAGAGGGTTGATGGATGCCCTCATATTTCTTGCAGGTGTGGAAATCAGTTTTGTTATAGCTGTGGATCCGATTGGAATCAACATCATGTGTGTCCTTCTCCCTGA 528 0.4545 MSSISTKILKTVESSAKVTSLKGKEKESGESSGSFDDSVSFCEICKDTKATDEMFTNNKNCTHKFCSDCTTSYISSKIQESISVKCPDPRCGGVLDPLLCRMECEEFQALKKGEKEKDDLLLIGLVKDKKWKRCPHCKFYVERVDGCPHISCRCGNQFCYSCGSDWNQHHVCPSP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1477 175 SMART ibrneu5 114 172 IPR002867 GO:0008270
Bisa10g1477 175 SUPERFAMILY RING/U-box 115 172 - -
Bisa10g1477 175 CDD Rcat_RBR_unk 130 166 - -
Bisa10g1477 175 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 102 167 IPR031127 GO:0004842|GO:0016567
Bisa10g1477 175 Gene3D - 101 174 - -
Bisa10g1477 175 SUPERFAMILY RING/U-box 37 103 - -
Bisa10g1477 175 Pfam Zinc finger, C3HC4 type (RING finger) 42 87 IPR018957 GO:0046872
Bisa10g1477 175 ProSiteProfiles TRIAD supradomain profile. 38 175 IPR044066 -
Bisa10g1477 175 Pfam IBR domain, a half RING-finger domain 127 172 IPR002867 GO:0008270
Bisa10g1477 175 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1477 Bisa-ChrBisa10 40474808 40475692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1477 36 162 C3H Transcription Factor Family AT2G31510 31.387 3.95e-10 55.8