Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1476 ATGCTATCTTCATCATCACCTTCTTCTTCTACTAATGATCCCTTCGTTGATGAATTCTACTTCTCAGCCCTTTTCGACGACGACCAGATATTTCCAATCTCCGATGAGAAATACGTAGAACAGATTCAGCTTCAAGAGGCCCTCATGTCCTCCTCATCCTTCATGTTCAGAAACCAGGAAACCAAGGTTCTCAACGTGGAAGAATCTTCTAGAAGAGTTACTTCCCTGAAGGGGAAAGAGAAAGAGACGGGCGAATCTTCTAGAAGCTTCGACGACTTCATGAGCTTATGCGAAATCTGCATGGACACAAAACCCCTCCACGAAATGTTCACCAACAACGCAAACTGCACCCACACGTTCTGTTCACACTGCATCGCATCCTACGTGGCAGCCAAGGTTCAAGAGAACATATCAATGGTGAAATGCCCCGATCCAAGGTGCATGGGAGTGTTGGATCCTATGTTCTGTCGTTCGATCATCCCAGAGGAGGTGTTTGGGAGGTGGGAAAATGCTCTGTGCGAGAATCTGTTTGTGGGGTATGAGAAATTGTACTGTCCGTTCAAGGATTGCTCGGCGATGATGGTGATGGAGGAGAGGGACGTCGAGGAGGTTGTGACATCCTCGGAGTGTCCGAACTGCAGGAGGCTGTTCTGTGCGCAGTGTAGGGTTTCGTGGCATGCAGGGATGGAATGTGGGGAGTTTCAGACCTTGAAGAAAGGTGAGAGAGAGAAGGATGATCTGTTGTTGATGGAGCTTGCGAAGGATAAGAGATGGAGGAGATGCCCTCGATGCAAGTTTTACGTGGAGAAGGTTGATGGATGCGCTCATATTTCTTGCAGGTTTGTGTCTGTGCGTTCTAGTTTGAGACTATTTGTGATTGAATTAGGAGAAACAACTACTTAA 903 0.4729 MLSSSSPSSSTNDPFVDEFYFSALFDDDQIFPISDEKYVEQIQLQEALMSSSSFMFRNQETKVLNVEESSRRVTSLKGKEKETGESSRSFDDFMSLCEICMDTKPLHEMFTNNANCTHTFCSHCIASYVAAKVQENISMVKCPDPRCMGVLDPMFCRSIIPEEVFGRWENALCENLFVGYEKLYCPFKDCSAMMVMEERDVEEVVTSSECPNCRRLFCAQCRVSWHAGMECGEFQTLKKGEREKDDLLLMELAKDKRWRRCPRCKFYVEKVDGCAHISCRFVSVRSSLRLFVIELGETTT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1476 300 ProSiteProfiles Zinc finger RING-type profile. 97 146 IPR001841 -
Bisa10g1476 300 ProSiteProfiles TRIAD supradomain profile. 93 300 IPR044066 -
Bisa10g1476 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 279 IPR031127 GO:0004842|GO:0016567
Bisa10g1476 300 Pfam IBR domain, a half RING-finger domain 182 231 IPR002867 GO:0008270
Bisa10g1476 300 SUPERFAMILY RING/U-box 177 236 - -
Bisa10g1476 300 CDD BRcat_RBR_unk 181 234 - -
Bisa10g1476 300 Gene3D - 183 232 - -
Bisa10g1476 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 178 IPR013083 -
Bisa10g1476 300 FunFam RBR-type E3 ubiquitin transferase 93 179 - -
Bisa10g1476 300 Gene3D - 233 281 - -
Bisa10g1476 300 SUPERFAMILY RING/U-box 95 175 - -
Bisa10g1476 300 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Bisa10g1476 300 SUPERFAMILY RING/U-box 242 279 - -
Bisa10g1476 300 SMART ibrneu5 166 231 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1476 Bisa-ChrBisa10 40461715 40462617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1476 115 280 C3H Transcription Factor Family AT2G19610 27.011 4.72e-12 64.3