Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1436 ATGTGTGGAACCGTAGCGCGTGAAGCAAACAAACTCTCGTTCTGCTCTTGCTCTGGTCAACAGTCAACAAAGCGAAAGCCTGTGACGCCCCACTGCTCCACAGCCCAGCCATTTTTCTACCATATTCTTTCTCTCTCTCCCTCTCCCTCTCCATTTTGCTTTCTCAGAATCCAAACAGAATCGGAGCTCAACCCCAGGAAAATATTTAAGGAAATCCAAACACTAGGAATGGGTGAGAAAGATGAGGGCTTGGGGTTGAGTTTGAGCTTGGGTTGTGGAGGGAATCAACTTTCTTTGAGCGTGAATCCCATCAAGAACTCTACACAATCTGTTCCAAATCAAAGGACTTCCTGGAATGATAATTTTCAGTTACCTGATTCTTACGTAGGAGATCCGAGCTCCGAGACAAGATCGTTCCTCCGAGGAATAGATGTGAATTTGGCACCGTCAACGGTGGTGAATTGGGTTGAGGAGAATGGCGTCTCATCGCCAAACAGTACAATATCGAGTATCAGTGGGAAGCGAAGTGAGAGGGAGCTGAACGGAGACGAAATCGACGCCGAGAGGACTTCGTGCTCCCGAGGAAGTGACGAAGAGGACGGCGCCGGCGGTGATACTTCAAGAAAGAAGCTCAGGCTCTCTAAGGAACAGGCCATGCTGCTGGAGGAGACATTTAAGGAACATAACACGCTCAATCCGAAACAAAAGCAGGCATTGGCTAAGCAGCTGAATCTGAGGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTAGATTGTGAATACTTAAAGAGGTGCTGTGAGAATCTAACTGAGGAGAATAGGAGGCTGCAAAAGGAAGTGCAAGAGCTTAGGGCCCTAAAATTGTCCCCTCAGCTCTACATGCATATGAACCCTCCCACCACTCTTACTATGTGCCCTTCGTGCGAGCGTGTCACGGTCTCATCCTCCTCCTCCTCGTCCACCGTGACTGCCACTGCCCCCTCTGCTGTTGCGCCTACAAATCGTGATCTGTTGGGCCCTGACATCCAGCAGCCGGTTCTGCTCAACCCATGGGCAGCAATGTTGGTCCAACACAGGCATATGTAA 1119 0.496 MCGTVAREANKLSFCSCSGQQSTKRKPVTPHCSTAQPFFYHILSLSPSPSPFCFLRIQTESELNPRKIFKEIQTLGMGEKDEGLGLSLSLGCGGNQLSLSVNPIKNSTQSVPNQRTSWNDNFQLPDSYVGDPSSETRSFLRGIDVNLAPSTVVNWVEENGVSSPNSTISSISGKRSERELNGDEIDAERTSCSRGSDEEDGAGGDTSRKKLRLSKEQAMLLEETFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVTVSSSSSSSTVTATAPSAVAPTNRDLLGPDIQQPVLLNPWAAMLVQHRHM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1436 372 CDD bZIP 257 296 - -
Bisa10g1436 372 Gene3D - 212 262 - -
Bisa10g1436 372 Coils Coil 270 300 - -
Bisa10g1436 372 SMART HOX_1 206 268 IPR001356 GO:0003677
Bisa10g1436 372 CDD homeodomain 208 265 IPR001356 GO:0003677
Bisa10g1436 372 MobiDBLite consensus disorder prediction 161 175 - -
Bisa10g1436 372 MobiDBLite consensus disorder prediction 161 210 - -
Bisa10g1436 372 SMART halz 264 307 IPR003106 GO:0006355|GO:0043565
Bisa10g1436 372 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 87 341 - -
Bisa10g1436 372 FunFam Homeobox-leucine zipper protein 18 193 269 - -
Bisa10g1436 372 SUPERFAMILY Homeodomain-like 194 265 IPR009057 -
Bisa10g1436 372 ProSitePatterns 'Homeobox' domain signature. 239 262 IPR017970 GO:0000981|GO:0006355
Bisa10g1436 372 Pfam Homeobox associated leucine zipper 264 298 IPR003106 GO:0006355|GO:0043565
Bisa10g1436 372 Pfam HD-ZIP protein N terminus 77 179 IPR006712 GO:0005634
Bisa10g1436 372 ProSiteProfiles 'Homeobox' domain profile. 204 264 IPR001356 GO:0003677
Bisa10g1436 372 Pfam Homeodomain 208 262 IPR001356 GO:0003677
Bisa10g1436 372 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1436 Bisa-ChrBisa10 39259824 39263199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1436 106 370 Homeobox Transcription Factor Family AT3G60390 63.121 3.94e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa10g1436 HD-ZIP_N 1.2e-29 No_clan