Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1393 ATGGAGAACTTGACTGAAGATAGCCTTGATATTGAGTTTCATATTCTCGAATACAGGCATTCACGTTTTACAGGGAATCCTATATTCACACGTATTTCAGAGATTCAGGTTCCTTACATAATTTCTTGTGAAGAATTACTGTTCGATCCGTTTATATTTCTCCAAGAACACTTATACAGCTTTTTTTCTGACGATGAACTTCAAAGAATAGAACCTGGATTTGCATATGATGTTCAATCAAAAATCCAAAATTATCGTTCTACTATACGAGAAACTACTTTTCGTCCTCACTTGATACCTTTGTTAATAGAAGTTCATATTCCTCGTTCGCATGAAGAAGATGACGAAGAAGATCCAATTCCAGATACAATTCTAGCATCAGAGGAAGAAGATTACGAAGGAGATCAAGACATGATTGATGTAGTCATAGTTCGTCTTCCTCCTTCGCATGAAGAAGATGACGAAGAAGATCCAGACACAATTCTAGAATCAGAGGAAGAAGATTACGAAGAAGATCCAGACACAATTCTAGAACCAGAGGAAGAAGATTACGAAGAAGATTCAGACATAATTCTAGGATCAGAGGAAGAAGATTACGAAGAAGATCCAGACATAATTCTAGGATCAGAGGAAGAAGATTACGAAGAAGATCCAGACATAATTCTAGGATCAGAGGAAGAAGATTACGAAGAAGTTCAAGACACAATTCTAGAATCAGAGGAAGAAGATTACGAAGAAGATCAAGACATGATTGATTTAGTCATAGAGCAATCAATGGAAGATGTGATTATGATTCCAGCATCGGAGGAAGCGATAGCATCACTCAAGAAACTTGAATTACCAAGTGACAAAGCTAAGATGGAAGTGTGTAGCATCTGCTTAGAAAATTTTGAAGACGACAACGATGTTTCAGGTACACCTTGTAACCACTTCTATCACAAGGATTGCATTGTGAAATGGCTTAGAACAAGTAAGTCATGTCCATTGTGTCGGTTCCAAATGTCCGCATGGAATGAAATCTTAGATCAATAG 1032 0.3711 MENLTEDSLDIEFHILEYRHSRFTGNPIFTRISEIQVPYIISCEELLFDPFIFLQEHLYSFFSDDELQRIEPGFAYDVQSKIQNYRSTIRETTFRPHLIPLLIEVHIPRSHEEDDEEDPIPDTILASEEEDYEGDQDMIDVVIVRLPPSHEEDDEEDPDTILESEEEDYEEDPDTILEPEEEDYEEDSDIILGSEEEDYEEDPDIILGSEEEDYEEDPDIILGSEEEDYEEVQDTILESEEEDYEEDQDMIDLVIEQSMEDVIMIPASEEAIASLKKLELPSDKAKMEVCSICLENFEDDNDVSGTPCNHFYHKDCIVKWLRTSKSCPLCRFQMSAWNEILDQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1393 343 CDD RING-H2_PA-TM-RING 289 331 - -
Bisa10g1393 343 SMART ring_2 290 330 IPR001841 -
Bisa10g1393 343 Coils Coil 222 257 - -
Bisa10g1393 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 336 IPR013083 -
Bisa10g1393 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 172 334 - -
Bisa10g1393 343 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Bisa10g1393 343 SMART ringv_2 289 331 IPR011016 GO:0008270
Bisa10g1393 343 MobiDBLite consensus disorder prediction 147 186 - -
Bisa10g1393 343 SUPERFAMILY RING/U-box 289 335 - -
Bisa10g1393 343 MobiDBLite consensus disorder prediction 152 186 - -
Bisa10g1393 343 Pfam Ring finger domain 290 331 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1393 Bisa-ChrBisa10 36456766 36457797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1393 249 334 C3H Transcription Factor Family AT1G18760 32.584 4.32e-13 66.2