Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1341 ATGCCCTCAAAATTCTTATCACAATTCCCTCTTCTCAAAGTGTCTTCCTTAGCTCGTTTCCCTTCCATGAAGCTCGGAGCGCCCACTCCATTCTCTCGGACAATCCCCATTTTCTCCCGGGTTTTCCCCTTCAGGCTCAAGTACCTGGGGCTGGAGTCTCGCGCTGTTCGGAATGAAATACTCGGCCCAAGGCGATTCTCGACTCGGTCGTTTACGGGGAGGACTGGGTCGCGGTCCGAGTTTAACAGGGGGAGTAGGGATATGGATGGGGTAAGGGTTTCGAAGAGTTTGATTGAGGATGAGGCTGAACTCAGTGATTGGGTTGACGACTTGAGGACCGATTCTTTCCGTGGTCGACTCACTAGCGAAGACGACTCGGATGGGGAGAGGCGTCGTAACGGAGGGAGGAGTAGAGGATCTGTGTCGATGAAACGGAGGGGGGAAAGTGGCTCAGATAGGTTTGCTGAGTCCCCTCGGAGAACTCGGGATTCATTTGAGTCATTTTCGAGGAATTCTCGTATGAGCCGAAGATTTGAAGATAATGATGAGGAGAAGGAAGATGGATTCCGCTCCCGGAGAAGTGGTAGAGTGTCCGAAGGTCGGAATGCGAAATCTCTCTTAGGGAAGAGACGTGGTAAGGATGTTATGAGTGGGAGAAAGGATGGAAGGAGAAATTCGTATTCGATGGGTAAGGATGATGTTGATGAAGATAAACAGGAGGCTAAGAAGTTCATGGGAGGTGTTAGAGATTTTCTCAGCGAAGAAGATAGTGAAGTTGAAGATACTGGGGATGACGACGACGGTGATATTTTGAAGAAGAGTAGAAGTTCATTGTTTGGTCAAGAAAATGAGATGAAGCAGAGCAGGGCGCCAAGAGATTCTCCTGAGAGATCTGATTCATATTTAAGCGAGACCAGATTTGATCAATGTTCAATCTCGCCATTGTCATTGAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACCGTTGTGCAGGAGGCAACTCTTCCAGTAATACTCAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACTGGAAAAACTGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTACAAAGTCACCTCCAATTGATCGTGATCAAAAGCGACCTCCAATTCTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCAGCTGCAGAAGCCACTAAGCTACTAAAGTACCACCCTTCGGTTGGCGTTCAAGTTGTAATTGGAGGGACAAGACTTGCGTTAGAACAGAAACGCATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGACCATATTGAGAACACTGCTGGTTTTGCGACTAGGCTAATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCACTTACTGGACATGGGATTTCGCAAAGATATTGAGAGGATAATTGCTGCAGTTCCTAAACAACGACAAACTCTTCTGTTTTCTGCCACTGTTCCAGAAGAGGTTCGTCAAATCTGCCATATTGCATTGAGAAGAGATCATGAATTTATCAATACAGTTCAAGAGGGTAGTGAGGAGACACATGCACAGGTTCGACAAATGCATTTAGTTGCCCCATTAGACAAGCAATTCCCTCTACTCTATGTTCTTCTAAAGGAGCATATAGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAAACTTGTTGCTGACTTTCTTGGCGAGTTGAACTTGAATGTGAGGGAAATTCATTCAAGAAAACCTCAGAGCTATAGAACCAGGGTCTCTGAGGAATTTCGGAAGTCAAAGGGCCTAATCCTTGTTACTTCAGATGTTTCTGCACGTGGAGTTGATTATCCGGATGTCACTCTAGTTGTACAGATGGGTTTACCAGCTGATAGACACCAATATATACACCGGCTGGGTCGAACAGGTCGAAAAGGTAAAGAGGGGCAAGGCATATTGCTACTGGCTCCGTGGGAAGAATTTTTTTTATCTACCGCTAAGGATTTGCCGATTACAAAAGCTCCAATGCCTCTAGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCCCTAGCCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGTCCTGGCTTGGTTACTACAATTCCAACAAGAAAGTAGGGAAAGACAAGTATAGGCTAGTGGAGCTTGCAAATGAGTTTAGTAGAAGCATGGGGCTTGATAACCCCCCAGCTATTCCTAAGCTCGTTCTTGGCAAGATGGGCCTTAAAAACATCCCTGGTTTGCGTTCCAAATAG 2322 0.4591 MPSKFLSQFPLLKVSSLARFPSMKLGAPTPFSRTIPIFSRVFPFRLKYLGLESRAVRNEILGPRRFSTRSFTGRTGSRSEFNRGSRDMDGVRVSKSLIEDEAELSDWVDDLRTDSFRGRLTSEDDSDGERRRNGGRSRGSVSMKRRGESGSDRFAESPRRTRDSFESFSRNSRMSRRFEDNDEEKEDGFRSRRSGRVSEGRNAKSLLGKRRGKDVMSGRKDGRRNSYSMGKDDVDEDKQEAKKFMGGVRDFLSEEDSEVEDTGDDDDGDILKKSRSSLFGQENEMKQSRAPRDSPERSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVTKSPPIDRDQKRPPILVLVICPTRELACQAAAEATKLLKYHPSVGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPEEVRQICHIALRRDHEFINTVQEGSEETHAQVRQMHLVAPLDKQFPLLYVLLKEHIADDVDYKVLVFCTTAMVTKLVADFLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQMGLPADRHQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPITKAPMPLVDPDTKKKVERALAHVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLKNIPGLRSK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1341 773 CDD SF2_C_DEAD 534 667 - -
Bisa10g1341 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 305 333 IPR014014 GO:0003724
Bisa10g1341 773 CDD DEADc_MSS116 312 521 - -
Bisa10g1341 773 PANTHER RNA HELICASE 269 702 - -
Bisa10g1341 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 553 704 IPR001650 -
Bisa10g1341 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 673 IPR027417 -
Bisa10g1341 773 MobiDBLite consensus disorder prediction 67 87 - -
Bisa10g1341 773 Gene3D - 528 752 IPR027417 -
Bisa10g1341 773 MobiDBLite consensus disorder prediction 118 305 - -
Bisa10g1341 773 MobiDBLite consensus disorder prediction 118 253 - -
Bisa10g1341 773 MobiDBLite consensus disorder prediction 286 303 - -
Bisa10g1341 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 519 IPR014001 -
Bisa10g1341 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 497 IPR027417 -
Bisa10g1341 773 Pfam Helicase conserved C-terminal domain 558 658 IPR001650 -
Bisa10g1341 773 Pfam DEAD/DEAH box helicase 330 507 IPR011545 GO:0003676|GO:0005524
Bisa10g1341 773 SMART helicmild6 577 658 IPR001650 -
Bisa10g1341 773 Gene3D - 269 520 IPR027417 -
Bisa10g1341 773 SMART ultradead3 324 537 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1341 Bisa-ChrBisa10 34060051 34065758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1341 296 688 Eukaryotic Initiation Factors Gene Family AT3G19760 28.358 4.72e-45 165